Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1970 ATGGCACCCGGAGAAGAAGGGATAGTTTCCTCCCACGTTCCCGTGGAGAGTTTCCAGTCAACAGAACTAGAACACGCGAAGCCCCGAAGCAAAGATTTCTTCAGATTCGATGTGACTGCTGTAGCTTTGTGGGATCCACTTCAACACACATCTCCATCATCCATATTCCAAGCCTCAACACGCATAAGTTGCAAGCGCTTCTACGAAGATAATGGAGATTCCCTAAGAAGTTTCTTACTGGACCCACAATTCTCTCCATACTTCACCATTGAAGACATGGATCTAATCATGCAGAGGATCATGCCTCTGGTTCAAGAACTCTTTGGGGTTCAGAGTCTTCCTCTTGAGAATGATAATGAATATGCAGATTCAGTACCCCTTGAGTTCCCTGTGGTTTTGAGCATTATTTTGGACACGATGGGAAACGAAGAGAGTGAAGCAATTGAAGAGTCAATGCAGCACAGCGGTGGAATGATTCCCGCTTCCAACGAAGCCATCCAATTGCTGAAAACATATACGACTTTTCCTCCTCAAGAAGAGTGTAATATTTGTTTGGAGAAGTTTGAAGGTGAAGAATGTGACGAAGATGTCAAGCTTTCGCAAATGCCTTGCGGCCATGTCTTTCACCATCCATGTATTGTGCCATGGCTCCTCACTAGTCACCTATGTCCCCTTTGTCGCTTCCCTATGCCTACTCAATGA 702 0.453 MAPGEEGIVSSHVPVESFQSTELEHAKPRSKDFFRFDVTAVALWDPLQHTSPSSIFQASTRISCKRFYEDNGDSLRSFLLDPQFSPYFTIEDMDLIMQRIMPLVQELFGVQSLPLENDNEYADSVPLEFPVVLSIILDTMGNEESEAIEESMQHSGGMIPASNEAIQLLKTYTTFPPQEECNICLEKFEGEECDEDVKLSQMPCGHVFHHPCIVPWLLTSHLCPLCRFPMPTQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1970 233 ProSiteProfiles Zinc finger RING-type profile. 181 227 IPR001841 -
Apr3g1970 233 SMART ring_2 181 226 IPR001841 -
Apr3g1970 233 Pfam Ring finger domain 180 227 IPR001841 -
Apr3g1970 233 CDD RING-H2_PA-TM-RING 180 227 - -
Apr3g1970 233 SUPERFAMILY RING/U-box 180 232 - -
Apr3g1970 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 232 IPR013083 -
Apr3g1970 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 232 - -
Apr3g1970 233 PANTHER F6A14.12 PROTEIN-RELATED 101 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1970 Apr-Chr3 35719337 35720038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1970 146 233 C3H Transcription Factor Family AT1G18760 35.484 1.49e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1970 - - aprc:113859940 484.182