Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1967 ATGTTAAATATGTTGGATTTACTTTATATATTATCTGGAGAAAGTCTTTCTTTCATTTTTTTCTTAGATGCAAGGGTTTGGGTATTTTTAATGTATAGGGAGATGACTAGGAAGAGGATACAGATCAAGAAAATCGACAATATCAGTTCCAGGCAGGTGACTTTCTCCAAGAGAAGGAAAGGGCTTTTCAAGAAAGCTCAGGAATTGTCTACTCTTTGTGATGCAGATATTGCCCTCATAGTCTTTTCTGCAACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTATGCACCAAGTGATTGAAAGGCGCGATAGGCATTCAGCAAGTCATAGATTGGACCGTCCAGCTATAGATCAGCTGCAGCTTGAGAGTGATTCCAACGACATGCTGCGCCAGAAAGTAGAAGATAAGAATCGTGAACTGAGGCAGATGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTCCAGAAACTAGAGGAACTGCTTAAAAGAGGTTTGACAAATATTTCGAAAGTAAAGGATGAAAAGATTATGCAAGAGATCAGCACCCTTAAGAGAAAGGAAGTGGAACTGACGGAAGAAAACCAAAAGTTAAAACAGGTACCGAGCCTTACACATGTACAAAGGCAATCATCGGAATCCATTATCAGCACTTCATCTTATCTTCCTGAAGATGGTGGTGGTGACACATGTCTCAAGTTGGGGTTACCTTTGCTTAAATAA 729 0.3978 MLNMLDLLYILSGESLSFIFFLDARVWVFLMYREMTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYASSSMHQVIERRDRHSASHRLDRPAIDQLQLESDSNDMLRQKVEDKNRELRQMNGEDLQGLTLQELQKLEELLKRGLTNISKVKDEKIMQEISTLKRKEVELTEENQKLKQVPSLTHVQRQSSESIISTSSYLPEDGGGDTCLKLGLPLLK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1967 242 ProSiteProfiles MADS-box domain profile. 35 95 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 CDD MADS_MEF2_like 37 111 IPR033896 GO:0000977|GO:0045944
Apr3g1967 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 34 218 - -
Apr3g1967 242 ProSitePatterns MADS-box domain signature. 37 91 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 PANTHER - 34 218 - -
Apr3g1967 242 Coils Coil 183 203 - -
Apr3g1967 242 ProSiteProfiles K-box domain profile. 120 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g1967 242 Gene3D - 47 115 IPR036879 GO:0003677|GO:0046983
Apr3g1967 242 Coils Coil 127 147 - -
Apr3g1967 242 Pfam K-box region 127 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g1967 242 SMART madsneu2 35 94 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 PRINTS MADS domain signature 37 57 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 PRINTS MADS domain signature 57 72 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 PRINTS MADS domain signature 72 93 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 44 91 IPR002100 GO:0003677|GO:0046983
Apr3g1967 242 SUPERFAMILY SRF-like 36 112 IPR036879 GO:0003677|GO:0046983
Apr3g1967 242 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1967 Apr-Chr3 35660789 35682507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1967 35 239 MADS-box Gene Family AT2G22540 45.570 1.34e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr3g1967 K-box 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1967 - - aprc:113860188 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1967 3 35660789 35682507 Apr1g1255 1 21284354 21301449 PCT