Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1956 ATGGATGCTGGGGTGAACAATCCGAGTGAGGGACGAGTGGTGGTGGTTCCCATGCATGTCGATTATGCCAATGGAACTGATGAAGGTGAAGAAGCTTCTTCTGCTATGAACTCCAGAACCAGTGAACTCACCATTTCCTTTGAAGGAGAGGTCTATGTTTTCCCCGCTGTTACGCCAGAAAAGGTGCAGGCTGTATTATTACTCTTGGGAGGGCAGGAGATGCCAAATAGTATCCCCACCTCTGACTATTTGCTGCAGCAAAACTGTCAGGACATTAGGACAATAAATGATTCTTCCCGAAGTTCAAAGCTTTCTCGAAGAATTGCATCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATTCGGTACTCTTGCCGTAAAGAGGTTGCTCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAGGAAGACTACAAATCTCCTACTGAAAACTGGGATTCAAGCAATGGTACTCCTTGCCCAGAATCTACTGAACGTAGATGCCAACACTGTGGAATTAGTGAGAAATCTACTCCAGCTATGCGTCGAGGACCAGCTGGTCCAAGATCTCTTTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGATTGCTTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCAGAAAATTCTGGTGCTGACCAGGAAAAGGAGGGAAGCCCTGAGGAAACTAAGCCTGTGCCAATGGATTCCAGACAGTCGCCTGAAAAGACAAATGAGCAGTTTATTCTCGATACTGCTGAAGCAGTTACCGACAACTTGTCCATGCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACACTTGAGGATCTTGCTGATGCTTCTGGGACTGAATTTGATATTCCTGCAGGTTTTGATGAGCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1017 0.4474 MDAGVNNPSEGRVVVVPMHVDYANGTDEGEEASSAMNSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGQEMPNSIPTSDYLLQQNCQDIRTINDSSRSSKLSRRIASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASLKEDYKSPTENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRIAFEQNELDTSADIKPSTTEPENSGADQEKEGSPEETKPVPMDSRQSPEKTNEQFILDTAEAVTDNLSMQVENHALSLHEQDTLEDLADASGTEFDIPAGFDEQVDIDDSNMRTYWL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1956 338 SMART tify_2 36 71 IPR010399 -
Apr3g1956 338 CDD ZnF_GATA 175 218 IPR000679 GO:0006355|GO:0043565
Apr3g1956 338 ProSiteProfiles GATA-type zinc finger domain profile. 170 227 IPR000679 GO:0006355|GO:0043565
Apr3g1956 338 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 30 329 - -
Apr3g1956 338 ProSiteProfiles Tify domain profile. 36 71 IPR010399 -
Apr3g1956 338 MobiDBLite consensus disorder prediction 228 272 - -
Apr3g1956 338 Pfam GATA zinc finger 176 212 IPR000679 GO:0006355|GO:0043565
Apr3g1956 338 Pfam tify domain 39 70 IPR010399 -
Apr3g1956 338 ProSiteProfiles CCT domain profile. 107 149 IPR010402 GO:0005515
Apr3g1956 338 MobiDBLite consensus disorder prediction 153 173 - -
Apr3g1956 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 224 - -
Apr3g1956 338 ProSitePatterns GATA-type zinc finger domain. 176 203 IPR000679 GO:0006355|GO:0043565
Apr3g1956 338 Gene3D - 169 228 IPR013088 GO:0006355|GO:0008270
Apr3g1956 338 PANTHER GATA TRANSCRIPTION FACTOR 28 30 329 IPR045280 GO:0006355
Apr3g1956 338 SMART GATA_3 170 223 IPR000679 GO:0006355|GO:0043565
Apr3g1956 338 Pfam CCT motif 107 148 IPR010402 GO:0005515
Apr3g1956 338 MobiDBLite consensus disorder prediction 245 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1956 Apr-Chr3 35586342 35592828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1956 2 219 Tify Gene Family AT1G51600 51.327 3.42e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr3g1956 CCT 4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1956 - - gmx:102669848 571.622