Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1950 ATGGCTTCTTTCTGGTTTCTCCAACTCGCTCTCAAATGCTTTCATCATTTCGCATGGCCTCTTCTTGCTTTGGTGTATCCTCTATGTGCTTCTGTACAAGCAATTGAGACTGATTCTTCTAAAGAAACAAGGGATTTGATCTCTTATTGGATACTTCTCTCGTTAATATACCTCTTTGAGTATGCTTTTCTGAGGCTTCTTCAATTGTTCCAGTTCTGGCCTTACATTAAGCTAGGGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTTTTATGTCTATAATAACCTTATTCGGTCATGCATCTCCATAAATGCACAAGCAGTCATATGCAGGTTAAATAACTGGAGGAAGTTTTTTGTCAAGAAAGATAACTTTTTACTGCATGCAGAGAGATACATACAAGAGAATGGAACTGAAGCCTTGGAGAAGCTCATAGCTAGCGAGAGCACAACTTGTAAACATGATGCAGAAACGACAAATGCAGTTAGAGCTATTGATAATAAAGAAGTGCAACAGACAAGTGGAAAAAAACTCCAAGCAGAGCACAAAGACATCGGGGATTTGGAGGAGATTGAGAAGAAAGAAATTTCTGTAGGCAAGCAAGCTATTCCTGCCATACCTAACCTTGAACCAAATCAGAAGAACTCTTCATCAGCCATGGTGGAAGGCACAGCTGGTGGACAGCTTCCTCAGAGTTCTACTTCTAAAAAGGAAGTACAGAAAGAGTGGGCTTGCGCTTTATGTCAAATAACAGTTACTAGTGAGAAAACCTTGGATAGCCACGTACATGGAAAAAAACACAGGGCTAGTTGTGAAGCTCTAAAAGCAAAAAATCAACCTGTTCCACAGAAGCAGAAAAATCAATCCAAAGAGGAAGTGAAACAGAAGAACGTTATCAATCAGAAAAATTCTCAAACCAAGAATGGAGAGAAGGAAAAAGAAATCAAGGATCACAAGGTACAAGGACAGCAAAGGAACCCAAGTGAACCTGTTGGTATGAATCAATCCAAAATTAGATGTGAAGTATGTGATGTTACTTGCCCTAATGAGGTTGCTATGATCGCCCACTTAAATGGGAAGAAGCACTTGGCTAAAATTAAAAATTTAGTCTGA 1122 0.3957 MASFWFLQLALKCFHHFAWPLLALVYPLCASVQAIETDSSKETRDLISYWILLSLIYLFEYAFLRLLQLFQFWPYIKLGIIFWLIIPDFGRAFYVYNNLIRSCISINAQAVICRLNNWRKFFVKKDNFLLHAERYIQENGTEALEKLIASESTTCKHDAETTNAVRAIDNKEVQQTSGKKLQAEHKDIGDLEEIEKKEISVGKQAIPAIPNLEPNQKNSSSAMVEGTAGGQLPQSSTSKKEVQKEWACALCQITVTSEKTLDSHVHGKKHRASCEALKAKNQPVPQKQKNQSKEEVKQKNVINQKNSQTKNGEKEKEIKDHKVQGQQRNPSEPVGMNQSKIRCEVCDVTCPNEVAMIAHLNGKKHLAKIKNLV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1950 373 MobiDBLite consensus disorder prediction 211 238 - -
Apr3g1950 373 MobiDBLite consensus disorder prediction 205 238 - -
Apr3g1950 373 SMART ZnF_U1_5 338 372 IPR003604 GO:0003676|GO:0008270
Apr3g1950 373 SMART ZnF_U1_5 243 277 IPR003604 GO:0003676|GO:0008270
Apr3g1950 373 Pfam TB2/DP1, HVA22 family 27 102 IPR004345 -
Apr3g1950 373 SUPERFAMILY beta-beta-alpha zinc fingers 235 282 IPR036236 -
Apr3g1950 373 Gene3D Classic Zinc Finger 231 276 - -
Apr3g1950 373 MobiDBLite consensus disorder prediction 272 336 - -
Apr3g1950 373 PANTHER HVA22-LIKE PROTEINS 288 372 IPR004345 -
Apr3g1950 373 PANTHER HVA22-LIKE PROTEINS 1 298 IPR004345 -
Apr3g1950 373 Gene3D Classic Zinc Finger 330 373 - -
Apr3g1950 373 Pfam Zinc-finger of C2H2 type 342 365 - -
Apr3g1950 373 Pfam Zinc-finger of C2H2 type 246 270 - -
Apr3g1950 373 MobiDBLite consensus disorder prediction 309 326 - -
Apr3g1950 373 SUPERFAMILY beta-beta-alpha zinc fingers 327 372 IPR036236 -
Apr3g1950 373 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 288 372 - -
Apr3g1950 373 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 298 - -
Apr3g1950 373 SMART c2h2final6 246 270 IPR013087 -
Apr3g1950 373 SMART c2h2final6 341 365 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1950 Apr-Chr3 35525029 35529174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1950 245 372 C2H2 Transcription Factor Family AT2G19380 28.682 4.24e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1950 - - gmx:100812073 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1950 3 35525029 35529174 Apr3g1950 3 35525029 35529174 ECH