Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1949 ATGTTGCAGCTTTCTATTCAACGAGTGAGGAACTTGAACTTTCTGAGGCCTCAGATCTCTGCTTTGGGGCGTTCCCATTTTGCAACAGCTGCTGAACCATCTTCCAGTAAGCGCAATCCCTCTAGGGTTCCGAATCTTATTGGGGGCAGTTTTGTTGACTCAAAATCATCAACTTTCATTGATGTTATAAACCCAGCAACCCAAGAAGTTGTTTCACAGGTTCCTTTGACTACAAATGAAGAGTTTAAAGCTGCTGTATCTGCAGCAAAGAAGGCATTTCCATCATGGCGTAACACTCCAATTACAACTCGGCAACGTGTTATGTTGAAGCTCCAAGAGCTTATACGCAGAGATATGGATAAACTTGCTCTGAATGTGACCACTGAACAAGGAAAGACATTAAAGGATGCACAAGGAGACGTATTTCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACACTACAAATGGGAGAGTATGTTTCCAATGTATCACATGGAATTGATAGTTACAGCATTCGAGAACCGCTTGGTGTTTGTGCTGGGATTTGTCCTTTCAATTTTCCTGCAATGATTCCCCTGTGGATGTTCCCTATGGCTGTTACCTGTGGCAATACCTTTGTTCTAAAACCATCAGAGAAAGACCCAGGTGCTTCTGTAATGCTTGCAGAATTGGCATTGGAGGCTGGTTTGCCTGAGTGTGTCTTAAATATAGTTCATGGAACCCATGATATTGTGAATGCTATTTGTGATGACGACGACATCAAGGCCATATCTTTTGTTGGTTCGAATGTTGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGCGTTCAGTCTAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCCAATGTTGATGCTACTGTAAATGCTTTAGTTGCTGCTGGTTTTGGTGCTGCTGGCCAAAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTTGGTGGCTCACAGACATGGGAAGCTAAACTTATAGAGCGTGCCAAAGCTCTTAAAGTAAATGCAGGAACTGAACCTGATACAGACCTTGGTCCAGTCATCAGCAAGCAGGCAAAGGAGCGAATACACAGATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTGCTGCTTGATGGAAGAAATATAGTGGTCCCAGGTTATGAATCTGGCAATTTTATTGGCCCAACCATCTTATCAGATGTCACTGCCAACATGGAATGCTACGAGGAGGAAATTTTTGGCCCTGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATCATCAACAAAAACAAGTACGGAAATGGCGCTTCTATATTTACTACATCTGGGGTTGCTGCTAGGAAATTTCAGACTGAGATTGAAGCTGGGCAGGTTGGCATCAATGTTCCCATTCCAGTTCCTTTGCCCTTCTTCTCATTTACAGGCAACAAGGCATCATTTGCTGGCGATCTCAATTTCTATGGCAAGGCTGGGGTTAACTTCTATACACAGATGAAAACAATAACTCAACAATGGAAGGATTCAACTGGTGGCAGCAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTGA 1617 0.4348 MLQLSIQRVRNLNFLRPQISALGRSHFATAAEPSSSKRNPSRVPNLIGGSFVDSKSSTFIDVINPATQEVVSQVPLTTNEEFKAAVSAAKKAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSHGIDSYSIREPLGVCAGICPFNFPAMIPLWMFPMAVTCGNTFVLKPSEKDPGASVMLAELALEAGLPECVLNIVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATVNALVAAGFGAAGQRCMALSTVVFVGGSQTWEAKLIERAKALKVNAGTEPDTDLGPVISKQAKERIHRLVQSGVESGAKLLLDGRNIVVPGYESGNFIGPTILSDVTANMECYEEEIFGPVLLFMEADSLEEAINIINKNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQMKTITQQWKDSTGGSKINMAMPTSQKS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1949 538 Pfam Aldehyde dehydrogenase family 51 515 IPR015590 GO:0016491
Apr3g1949 538 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Apr3g1949 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 47 496 IPR016162 GO:0016491
Apr3g1949 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Apr3g1949 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Apr3g1949 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 25 538 IPR010061 GO:0004491
Apr3g1949 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
Apr3g1949 538 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 25 538 - -
Apr3g1949 538 SUPERFAMILY ALDH-like 41 520 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1949 Apr-Chr3 35517664 35523502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1949 11 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.744 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1949 K00140 - gmx:100811544 988.023