Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1947 ATGATTGGAAGCATAGGTCGAGCCACATATCACCAACCTATGCAACTGTGGGACAAAACCACTCGCAAGCTTACAGATTTCACAACCCATTTCTCTTTTGTCATAGATTCACAGAACAGAAGTGTTTATGGAGATGGGATTGCATTCTTCCTTGCCCCCAATGGTTCAAAGCTTCCTAATGCCACAAAAGGAGGTTCTATGGGTCTGACACTTGATAATCAACCATTGAACTCAACTGATAATCCATTTGTTGCCGTGGAGTTTGATATCTATAAGAATTTATGGGATCCACCGCATGAACATGTTGGCATCGACATCAACTCTATGAGATCTGTTGCTAATGTGACATGGTTGGCTGAAATCAAGGAAGGGAAAGTCAATGAGGCTACGATCAGTTACAATTCTAGTACACTAAATTTAAGTGTTGTGTTCACCGGTTTTGACAATGAGAGTGGCACCATCCTACAACAACATCTATCTGCTATAGTTGATTTGAGACTTTATTTGCCAGAATTGGTTACTTTTGGTTTCTCAGCTGCCACAGGAAATGCAACTTCTATACACAGCCTTTATTCATGGGATTTTAACTCAAGTTTGGCAGCACAAGAAAACGTTGCAACAAGCACAGGAGTACCAGTTCCAAGGTCTCCAACCTCCCATACAGCTCCAAGTCAGAAAAGCAAGACCAAGACAGGATTGGCAGTGGGATTGGGTATCGGTGGATTTGTTTTGATTAGTGGGTTCGGTTTGGTTTCAATTGGCTTATGGAAGAAGTGGAAGAAAGGGAGTGAAGAGGAAGATCATGATTTGGAAGAGTATATGGGAGAGGATTTTGGGAGGGGGACAGGACCGAGGAAGTATTCATATGCCGAATTATCACAAGCAGCTAATAATTTCAAAGATGAGCATAAGCTAGGACAAGGAGGATTTGGATGTGTTTATAGGGGTTATCTTAAAGACATAAAGTCTTATGTTGCTATTAAAAGGGTGTCAGAAGATTCTGATCAAGGAATAAAGGAGTTTGCATCAGAAGTAAGAACTATTAGCCAGTTAAGGCATCGAAATCTAGTGCAATTGATTGGTTGGTGTTATGAAAGAAAAAAACTCTTGCTTGTGTATGAGTACATGCCAAATGGAAGCTTAGATGTTCATCTTTTCAAGAAACAGAGCTTGTTGAAATGGACAGTGAGATACAACATAGCTCGAGGCTTGGCCTCTGCATTGCTGTATTTGCACGAAGAATGGGAACAATGTGTTGTGCATAGAGACATAAAATCAAGCAACATCATGCTGGATTCAGAGTTTAACGCAAAACTTGGTGATTTTGGCTTAGCAAGGTTTGTGGACCATGCAAAAGGTGCACAAACTACTGCTTTAGCTGGGACTATGGGCTACATGGCCCCTGAATGTGCTACCACAGGAAGGGCTGGTAAGGAATCAGATGTATACAGTTTTGGAGTTGTTGCTTTAGAGATAGCTTGTGGAAGAAAGCCCATAAACCTTAAGGCTCAAGAAAATGAAATAAATATTGTGGAGTGGGTGTGGAGACTCTATGGAAGAGGGACAATTCTTGAAGCAGTAGATCCAAGACTAGATGGGGATTTTGAGGAGGAGCAAATCAAATGCTTGATGATTGTTGGTCTTTGGTGTGCTCACCCTGACCATAATAATAGGCCTTCAATAAGGCAAGCAATTCAAGTGCTTAATTTTGAAGCTCCCTTACCTAATCTTCCATCAAGTTTGCCTGTCCCAACATATCTTTCGGGCCCCCTACACTCATCCATAGCCCCATTCAACATAAACGCTTCAGAGGAAGGCCAAATCCAAAGAATAAGTTACACTTCAAACACAAACTCTTCTGGGTTCACTACAACTTCTGACGATGCTTCTCCCTCTCTGTCACTTTTGTACTCACGGTGA 1920 0.4156 MIGSIGRATYHQPMQLWDKTTRKLTDFTTHFSFVIDSQNRSVYGDGIAFFLAPNGSKLPNATKGGSMGLTLDNQPLNSTDNPFVAVEFDIYKNLWDPPHEHVGIDINSMRSVANVTWLAEIKEGKVNEATISYNSSTLNLSVVFTGFDNESGTILQQHLSAIVDLRLYLPELVTFGFSAATGNATSIHSLYSWDFNSSLAAQENVATSTGVPVPRSPTSHTAPSQKSKTKTGLAVGLGIGGFVLISGFGLVSIGLWKKWKKGSEEEDHDLEEYMGEDFGRGTGPRKYSYAELSQAANNFKDEHKLGQGGFGCVYRGYLKDIKSYVAIKRVSEDSDQGIKEFASEVRTISQLRHRNLVQLIGWCYERKKLLLVYEYMPNGSLDVHLFKKQSLLKWTVRYNIARGLASALLYLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARFVDHAKGAQTTALAGTMGYMAPECATTGRAGKESDVYSFGVVALEIACGRKPINLKAQENEINIVEWVWRLYGRGTILEAVDPRLDGDFEEEQIKCLMIVGLWCAHPDHNNRPSIRQAIQVLNFEAPLPNLPSSLPVPTYLSGPLHSSIAPFNINASEEGQIQRISYTSNTNSSGFTTTSDDASPSLSLLYSR* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1947 639 MobiDBLite consensus disorder prediction 614 639 - -
Apr3g1947 639 ProSiteProfiles Protein kinase domain profile. 299 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1947 639 PANTHER - 4 636 - -
Apr3g1947 639 SUPERFAMILY Protein kinase-like (PK-like) 283 588 IPR011009 -
Apr3g1947 639 MobiDBLite consensus disorder prediction 206 227 - -
Apr3g1947 639 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 202 IPR013320 -
Apr3g1947 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Apr3g1947 639 ProSitePatterns Protein kinases ATP-binding region signature. 305 328 IPR017441 GO:0005524
Apr3g1947 639 Gene3D - 1 209 - -
Apr3g1947 639 Gene3D Transferase(Phosphotransferase) domain 1 376 588 - -
Apr3g1947 639 Gene3D Phosphorylase Kinase; domain 1 284 375 - -
Apr3g1947 639 Pfam Protein kinase domain 299 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1947 639 Pfam Legume lectin domain 4 204 IPR001220 GO:0030246
Apr3g1947 639 CDD STKc_IRAK 305 569 - -
Apr3g1947 639 CDD lectin_legume_LecRK_Arcelin_ConA 4 199 IPR001220 GO:0030246
Apr3g1947 639 PANTHER RECEPTOR LECTIN KINASE 4 636 - -
Apr3g1947 639 SMART serkin_6 299 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1947 Apr-Chr3 35509179 35515720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1947 6 586 Receptor kinase-like Gene Family AT5G10530 50.842 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr3g1947 Pkinase 4.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1947 - - gsj:114419429 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1947 3 35509179 35515720 Apr3g1947 3 35509179 35515720 ECH