Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1946 ATGGGCGATTGTAATTGGCATTTTGGGCACGATGCAACGAGTAGTTATGCAATGGGAGCATTTTTGTTCCTAATGGTAACCCCTCTTGCAAATGCTCAACCTTTGTCTTTTGATTACAACTTCACTGATGCTGATGATGTAATACAAGTAAAGCTTGAAGGAAATTTCTCTTCTTCAAATGCTGGCATCCAACTCGCAGTGGACCCAAACAAAAGTGGATTTGGGAGTGTTGGGCGAGTCACAAGTTCCCAACTTTTTCATCTTTGGAACAAAAGCTCGAATGAACTAGAAAGCTTCACTACCCAATTTTCCTTTTCACTTCTCTCAAGCCAGACCCAGATTCCTCGTGGAGATGGTTTGACATTCTTCTTAGCAAACCCAAATCTCACAGATTTGAATGATGCAACACAACTAAAAGGAGGAGGCCTTGGCATTGGTCGTGGGGATCACAACTACCTTAACCAAACTTTCACAACTGAGTATCACTTTGTGGCGGTGGAGTTTGACACTTTCCCAAACCAGTGGGACCCACCTGACACACATGTAGGTGTGAATGTCAACTCTATGGTGTCTTACATAGCTGAGAAATGGTTGACAGATACTTCAAGCAGCCCTTACGATTGTTATATTGAATACAATTCAAGAGGTTATCATCTAAAAGTTTCTTTCACTGGATACAAGCTCAATGGTGAACGAGTAACACAGAACCTTTTGTACCACATTGATTTGAGTGAATACTTGCAAGAGTCGGTTATTGTTGGCATATCAGCTGCAACAGGAGATGGCTCGGAAGAAATACATACACTCATGTCATGGTCATTTAATAAAACCCCACCAACTAGTAGTGCTGATCATCAGAAAAGCAAGTTAATCATTCACAAGTTGTTGGCGGGAATAGGAATTGGTTTAGGTTTGTGTGCGTGTTTAGTTGGGTTGGTCCATGTTTTATTATGGAAGAGGAATAAAGGAAAAGAAGAAGAACCCACCTCAGAAACCGCTTCTGATTTGAAGATGGATGATGAGTTCCAAATGGGCACTGGACCTAAGAAGATTAGCTATGAGGAATTGGTATCTGCAACAAACAATTTCCAAGACACACAAAAGCTTGGCCAAGGTGGTTTTGGTTGTGTTTATAAAGGTTTTTTGAAGGACCAAAACTCCTATGCTGCTATAAAGAGAATATCAGCAGATTCAACGCAAGGTGTAAAGGAGTATGCGGCTGAAGTCACTATTATAAGCCAATTGAGGCACAGGAATTTGGTGAAACTCACTGGTTGGTGCCACAAAAAGAATGATCTCTTCTTGATATACGAGTACATGCCAAATGGTAGCTTAGATTCTCGGCTTTCTGGTGGAGAAAACTTTTTGTCATGGCAAGTGAGGTACAATGTAGCTTTGGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAATGTAATGTTGGACTCCAATTTCAATGCTAAGCTTGGGGATTTTGGCTTAGCTAGGCTAGCAGATCATGAAAAAGGGTCACATACCACAGTTATGGCTGGGACCATAGGTTACTTGGCCCCTGAATATATGAGCACAGGCAAGGCTAGAAAGGAATCTGACATATTTAGTTTTGGGGTTGTTTTGTTGGAGGTAGCCACCGGAAGAAAAGCCATTCACCACAGAGACAATGAGGAACAAGTATCATTAGTTGAGTGGGTGTGGGAACTCTATACATTGAGAAATCTCATTTCAGCTGCAGATCCTAACCTATGTGGGGATTTTGATGTGAAGCAAATGGAATGTTTGATGCTTGTTGGTCTTTGGTGTACAAATCCAGATTGCACATCCAGACCCTCCATAAAGCAAGTGAATAAGGTGCTTAACTTTGAAGCTCCTTTACCAATTATCCCACAACAGATCCCTGTGCTAGCCTATTTCCCTCCAGAATGTAATCATAAAGTTTGA 1980 0.4141 MGDCNWHFGHDATSSYAMGAFLFLMVTPLANAQPLSFDYNFTDADDVIQVKLEGNFSSSNAGIQLAVDPNKSGFGSVGRVTSSQLFHLWNKSSNELESFTTQFSFSLLSSQTQIPRGDGLTFFLANPNLTDLNDATQLKGGGLGIGRGDHNYLNQTFTTEYHFVAVEFDTFPNQWDPPDTHVGVNVNSMVSYIAEKWLTDTSSSPYDCYIEYNSRGYHLKVSFTGYKLNGERVTQNLLYHIDLSEYLQESVIVGISAATGDGSEEIHTLMSWSFNKTPPTSSADHQKSKLIIHKLLAGIGIGLGLCACLVGLVHVLLWKRNKGKEEEPTSETASDLKMDDEFQMGTGPKKISYEELVSATNNFQDTQKLGQGGFGCVYKGFLKDQNSYAAIKRISADSTQGVKEYAAEVTIISQLRHRNLVKLTGWCHKKNDLFLIYEYMPNGSLDSRLSGGENFLSWQVRYNVALGLASALLYLQEEWEKCVLHRDIKSSNVMLDSNFNAKLGDFGLARLADHEKGSHTTVMAGTIGYLAPEYMSTGKARKESDIFSFGVVLLEVATGRKAIHHRDNEEQVSLVEWVWELYTLRNLISAADPNLCGDFDVKQMECLMLVGLWCTNPDCTSRPSIKQVNKVLNFEAPLPIIPQQIPVLAYFPPECNHKV* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1946 659 Gene3D Phosphorylase Kinase; domain 1 348 439 - -
Apr3g1946 659 PANTHER - 27 658 - -
Apr3g1946 659 SUPERFAMILY Protein kinase-like (PK-like) 347 641 IPR011009 -
Apr3g1946 659 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 288 IPR013320 -
Apr3g1946 659 Gene3D - 33 279 - -
Apr3g1946 659 PANTHER LECTIN RECEPTOR KINASE 27 658 - -
Apr3g1946 659 CDD STKc_IRAK 369 633 - -
Apr3g1946 659 Pfam Legume lectin domain 36 287 IPR001220 GO:0030246
Apr3g1946 659 ProSitePatterns Protein kinases ATP-binding region signature. 369 392 IPR017441 GO:0005524
Apr3g1946 659 Gene3D Transferase(Phosphotransferase) domain 1 440 651 - -
Apr3g1946 659 ProSiteProfiles Protein kinase domain profile. 363 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1946 659 ProSitePatterns Legume lectins beta-chain signature. 164 170 IPR019825 -
Apr3g1946 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Apr3g1946 659 Pfam Protein kinase domain 363 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1946 659 SMART serkin_6 363 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1946 659 CDD lectin_legume_LecRK_Arcelin_ConA 35 275 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1946 Apr-Chr3 35501213 35503192 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1946 21 650 Receptor kinase-like Gene Family AT5G10530 44.012 1.31e-164 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr3g1946 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1946 - - cam:101492002 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1946 3 35501213 35503192 Apr3g1946 3 35501213 35503192 ECH
Apr1g1272 1 21525221 21527287 Apr3g1946 3 35501213 35503192 PCT