Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1945 ATGGAGAACCATTTTGTTCCTCCTAATAACCCCTCTTGCAAATATTCAGCTATCCAACTAACATTGAGGACAATGGACCCAAACAATGATGGGTCTGCAGCAGCAGGGCGAGTCACATATCCTCAAAAAATACATCTTTTGGATAACAATTCAAATGAACTAGATTTCACTACCAACTTTTCCTTTGTTATTTCCTCTAATCAGAGTCCTTATGCAGATGGTTTGACATTCTTCCTTGCAAGCCCAAATCTTCCATCCACAAATGATACACAAAAACTGAGCGGAGGAGGCCTTGGCATTGGTCTTGTGGATGGTGACAGAAATCTTCTCCAGACAGACTATCGATTTGTGGCAGTGGAGTTTGACACTTTCTCAAACAACTGGGACCCAGATGGATCACATGTTGGTGTAAGTATCAATTCTATGAAGTCTGAAATATTTGAGGAATGGTGGGTAAATATTACACAAGGGGAGATTTGTAACTGTAGTATTGAGTACAATTCTAGAAAGAGTATTTTGAATGTTTTTTTCACTGGATACAAATCCAGTGGTGGGGATGTCACACAGACTACCCAGAACCTTTCATATCAGGTTAATATTCCTGAGCAATTACAAGAGTTAGAGTCAGTTATTGTTGGCATATCAGCTGCAACAGGTGGGTATTTTGAGCAACATACCCTGCTGTCATGGTCATTTAGTACAAGTGTACCAAGTGGCATACAAAGTAATGCTGATTCTGAAAAGAGAAGCAAGTTAATCAACTTACACTTGTTGGAGGGGATAGGAATTGGTATATGTTTGTTCTTAAGTTTATTGGGGTTGTTCCATCTTTTATTCTGGGGAAAGAATAGAGGAAAAGAAGGCACTTCAGAAGCGACTTCTAATCTAAAGATGGATAATGAAATCCAGATGAGCACTGGACCTAAGAAAATTGGTTATTATGAATTGTTAACTGCAACCAACAACTTTGAAGAGACACAGAAGCTTGGCCAAGGTGGTTTTGGTGGTGTTTATAAAGGTTATTTGAAAGACTCAAACTCTTATGCTGCTATAAAGAGGATATCAGCAGATTCAAGACAAGGTATAAAGCAATATGCGGCAGAAGTGAAGACCATTGGCCAACTGAGGCATAGGAATTTGGTAAAACTCACAGGTTGGTGCCACAAGAGGAATGATCTCCTCTTGATATACGAGTACATGCCAAATGGTAGCTTAGATTCTCATCTTTTTCGTGGAGAAAGCATCTTGACATGGAAGATGAGGTACAACATAGCTCTGGGATTGGCCTCAGCATTGCTTTACTTACAAGAAGAATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTACAATGCTAAGCTTGGGGATTTTGGCCTAGCTAGGCTAGTGGATCATGAGCAAGGGTCACAAACCTCAGTTGTGGCTGGGACCATGGGTTATCTAGCCCCTGAATATATGAATACAGGAAAGGCTAGAAAAGAATCAGATATATTCAGTTTTGGGGTTGTTTTGTTGGAGTTAGCCAGTGGAAGAAAAGCCATTCATCACAAAGATTTGGAGGGAGAAGTATCATTAGTTGAGTGGGTGTGGGAGCTTTATGGATTGAGAAATATCCTTGCAGCAGTAGATCCAAATCTACTTGGAGAATTTGATGTGCAGCAAATGGAATGCTTACTGGTTGTTGGCCTTTGGTGTGCAAATCCAGATTGCAAATCCCGTCCCTCTATAAGGCAAGTGATTAAGGTGCTCAACTTTGAAGCTCCTTTACCCACTCTCCCACAACAGATCCCTGTGTTAACCTATTTCTGTCCAATAACAAATGACTTGTTTTTAACTGTTCCATGTTCCTTAAATGATACAAGTTAA 1893 0.401 MENHFVPPNNPSCKYSAIQLTLRTMDPNNDGSAAAGRVTYPQKIHLLDNNSNELDFTTNFSFVISSNQSPYADGLTFFLASPNLPSTNDTQKLSGGGLGIGLVDGDRNLLQTDYRFVAVEFDTFSNNWDPDGSHVGVSINSMKSEIFEEWWVNITQGEICNCSIEYNSRKSILNVFFTGYKSSGGDVTQTTQNLSYQVNIPEQLQELESVIVGISAATGGYFEQHTLLSWSFSTSVPSGIQSNADSEKRSKLINLHLLEGIGIGICLFLSLLGLFHLLFWGKNRGKEGTSEATSNLKMDNEIQMSTGPKKIGYYELLTATNNFEETQKLGQGGFGGVYKGYLKDSNSYAAIKRISADSRQGIKQYAAEVKTIGQLRHRNLVKLTGWCHKRNDLLLIYEYMPNGSLDSHLFRGESILTWKMRYNIALGLASALLYLQEEWEKCVLHRDIKSSNIMLDSNYNAKLGDFGLARLVDHEQGSQTSVVAGTMGYLAPEYMNTGKARKESDIFSFGVVLLELASGRKAIHHKDLEGEVSLVEWVWELYGLRNILAAVDPNLLGEFDVQQMECLLVVGLWCANPDCKSRPSIRQVIKVLNFEAPLPTLPQQIPVLTYFCPITNDLFLTVPCSLNDTS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1945 630 CDD STKc_IRAK 329 593 - -
Apr3g1945 630 SUPERFAMILY Protein kinase-like (PK-like) 307 610 IPR011009 -
Apr3g1945 630 Gene3D Phosphorylase Kinase; domain 1 308 399 - -
Apr3g1945 630 Pfam Protein kinase domain 323 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1945 630 Gene3D - 9 238 - -
Apr3g1945 630 CDD lectin_legume_LecRK_Arcelin_ConA 16 235 IPR001220 GO:0030246
Apr3g1945 630 SUPERFAMILY Concanavalin A-like lectins/glucanases 18 237 IPR013320 -
Apr3g1945 630 ProSitePatterns Protein kinases ATP-binding region signature. 329 352 IPR017441 GO:0005524
Apr3g1945 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Apr3g1945 630 PANTHER - 17 626 - -
Apr3g1945 630 ProSitePatterns Legume lectins beta-chain signature. 117 123 IPR019825 -
Apr3g1945 630 ProSiteProfiles Protein kinase domain profile. 323 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1945 630 Pfam Legume lectin domain 16 242 IPR001220 GO:0030246
Apr3g1945 630 SMART serkin_6 323 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1945 630 Gene3D Transferase(Phosphotransferase) domain 1 400 613 - -
Apr3g1945 630 PANTHER LECTIN RECEPTOR KINASE 17 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1945 Apr-Chr3 35495792 35497850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1945 17 610 Receptor kinase-like Gene Family AT5G10530 44.646 6.16e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Apr3g1945 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1945 - - cam:101492002 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1945 3 35495792 35497850 Apr3g1945 3 35495792 35497850 ECH
Apr3g1945 3 35495792 35497850 Apr1g1275 1 21556996 21558927 PCT