Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1944 ATGGGGAGAGGAAAGATCGTCATTCAAAGGATTAACGATTCAACTAGCCGGCAAGTGACGTTTTCCAAGAGAAGAAGTGGGTTGTTGAAGAAAGCTAGAGAACTATCGATTCTCTGTGACGCCGAAGTTGGATTGATTGTGTTCTCTTGCTCTGGCAAACTTTATGACTATGCAAGCACCAGCATGAAATCTGTTATTGAACGCTATCACAAGGCCAAAGAGGACCATCATCAGCTAATAAATCCTGCTTCCGAAGTCAAGTTTTGGCAAAGAGAAACAGCAAGCTTGAGACAACAAGTGCATTACATGCAGGAATGCCGCAGGCAATTGATGGGTGAAGAACTTTCTGGTTTGGGCATTAAAGAGCTAGGAAATCTGGAAAATCGACTGGAGATGAGTTTAAAGGTTATTCGCAAGAAAAAGGATGAAATTCTTACTGATGAGGTCAAAGAACTACACCAAAAGGAAAGCCTCAGTCTTCAAGAGAATGTAGAACTTCATAGAAAAATAAGCCTCATCTGCAAGGAAAATGCAGAACTACAAAAGGTTCTTGAAGCAAATAGTACAAAAGAAGATATTGCAACATCCGATCCTCCATACACTATGAACCATGGATATGATTTAATTGCGCCTATCAGTCTCCAGCTACGCCAGCCACATCCTCAACACAGTGAATCACCAGCCAAAGCAATGAAACTGGGGTATTACCTCAAACTAATGCTATTAATCATACAGCTTGGATCTATAAAAATATGA 756 0.4061 MGRGKIVIQRINDSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIVFSCSGKLYDYASTSMKSVIERYHKAKEDHHQLINPASEVKFWQRETASLRQQVHYMQECRRQLMGEELSGLGIKELGNLENRLEMSLKVIRKKKDEILTDEVKELHQKESLSLQENVELHRKISLICKENAELQKVLEANSTKEDIATSDPPYTMNHGYDLIAPISLQLRQPHPQHSESPAKAMKLGYYLKLMLLIIQLGSIKI* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1944 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr3g1944 251 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Apr3g1944 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 243 - -
Apr3g1944 251 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Apr3g1944 251 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Apr3g1944 251 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g1944 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Apr3g1944 251 Coils Coil 123 143 - -
Apr3g1944 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr3g1944 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr3g1944 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr3g1944 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g1944 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr3g1944 251 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 243 - -
Apr3g1944 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1944 Apr-Chr3 35478772 35487177 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1944 1 230 MADS-box Gene Family AT2G22630 54.348 1.71e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr3g1944 K-box 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1944 K09264 - gmx:100779647 332.413