Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1943 ATGGGGAGAGGAAAGATTGCTATTCGAAGAATCGAAAACTCGACTAACCGACAAGTGACTTTCTGCAAGAGAAGAAATGGGTTACTGAAGAAAAGTAGAGAACTATCTATTCTCTGTGACGCTGAAGTTGGATTGATTGTGTTTTCATCCACGGGCAAGCTTCATGAATATGCAAGCACCAGCATGGAATCAGTCATTGAGCGCTATGACAAGCAAAGAGAAGACCATTATCAACCAGTGGATCCTGCTTCAGCAATCAAGTTTTGGCAGGAAAAAGCAGCAAGCGTGAAGCAACAACTACAGCACTTTGAAGATTGCCACAGGCAATTGATGGGCGAAGAACTTTCTGATTTGGGTATTAATGAGCTACAGCATCTGGAAAAACAACTGCTGATGAGTCTGAAGAAGGTTCGCATTAAAAAGGATCAAACTTTTACTGATAAGATCAAAGAATTACACGAAAAGGGAAGCCTCATACACCAACAAAATGCAGAACTTCATAATAAGATAGACCTTATGCATAAAGAAAAAACAGAACTACAGAAGGTTATTGAAGCAAGGCGTAGGGAAGAAGAAAAAACAGCATCCAATCCTGCAAACACTCACCGTTATGAATATGATATAGTTGAGCCTCTCAGTCTTCAGCTAAGCCAACCACAGCCTCAATACAGTGAAGCGCCAGAAGAAGCCATGAATCTGGGGCATTCCCTCAAACTGTTGATATAA 726 0.4105 MGRGKIAIRRIENSTNRQVTFCKRRNGLLKKSRELSILCDAEVGLIVFSSTGKLHEYASTSMESVIERYDKQREDHYQPVDPASAIKFWQEKAASVKQQLQHFEDCHRQLMGEELSDLGINELQHLEKQLLMSLKKVRIKKDQTFTDKIKELHEKGSLIHQQNAELHNKIDLMHKEKTELQKVIEARRREEEKTASNPANTHRYEYDIVEPLSLQLSQPQPQYSEAPEEAMNLGHSLKLLI* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1943 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g1943 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr3g1943 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr3g1943 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr3g1943 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr3g1943 241 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Apr3g1943 241 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Apr3g1943 241 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Apr3g1943 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Apr3g1943 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr3g1943 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Apr3g1943 241 Coils Coil 173 193 - -
Apr3g1943 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 241 - -
Apr3g1943 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1943 Apr-Chr3 35459436 35473348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1943 1 239 MADS-box Gene Family AT2G14210 54.132 1.43e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Apr3g1943 K-box 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1943 K09264 - gmx:100779119 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1943 3 35459436 35473348 Apr1g1276 1 21593072 21611389 PCT