Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1940 ATGGAGAACTATCAGTACCCCTCCTACCCAGATTCCGGCGACTCCTCGCCGCGTTCAAGGGAGATCGACTTCGAAAACCCGCCGCCGTGGGACGAGCAGCAGCAGCAGAACCAGAACTACAAAGCCAAGTTCATGTGCAGCTACGGCGGCAAGATCCAGCCACGCACCCACGACAACCAGCTCTCCTACGTCGGCGGCGAGACCAAGATCCTTGCCGTCGATCGCAACATCAAGTTCCCCGCCTTTCTCTCCAAGCTCGCCGCTCTCTGCGACGCTACGCCGCAAGACCTAACTTTTAAGTACCAACTCCCCGGCGAAGACCTCGACGCGCTCATCTCCGTCACCAACGACGACGACCTTGAACATATGATGCACGAGTACGATCGCCTCTATCGCCCTTCTTCAAAACCTGTTCGGATGAGACTCTTCCTTTTCACCCTTTCTTCTAACCCTAATTCCTCTTTCTCTTCCGATCGTGATCGCTTCGTTGAGGCTCTTAATTCGGCTCCTCTTCCTCCCCAACCCGACCCGGTTAAGAACCCGCCCGTTCCTCCTTCTAACGTTGATTACCTCTTCGGTCTTGATAAGGCTGTCGCTCCTCCGCCTCATCCTCCTTCCTTTGCCGCCGTTAAGTTCCACGATCCTGTGCCTGAGCCTGTCGCACCGCCGCCGGAGTACCAGTCTCGCGGAGGGGCCGTTGATCGGGTTGTTGGATCGGATCCGAATGTGAACCCGATTGAGATTCAGAGGCAGTTGCAGCAGGAGATGCAGCGTTTGCAAATCGCGGAGAGTGATTATCGGAGGAGGAGTGAGGATGGATTTGCCGGAGGATATGCTGGTGGCGGCGGCGGTGCTGATTATTACTTGCAGAAGCTGCCGGAGAAGGTACCGCCGTCTAATTCGCCGGCTGGTGTTCCGCATCCCGCGGGGTACTGGCCGGAGAAGCAGTTTTCGGGCGAGGGTTTTCAGACGACGATGACAACGGCTGCAGGTGGAGGGGACCAGCCGGTGTATGTGATCCCGGCACCGGGGACGTTCTACCACGCGCCAATGGTGCGTCCTCCGGCGGCGCAGGTGACTCAGGGGTACTACACGGTGCAGAGAATGGGTTCCGATGCTTACCGTGAACAGCCGGTTTACGGAGGCGTCGCTCCCCCGAAAGCGGCGTTTTCGTCTGCGGGTCCTGCGAGCATGGCACCGGCTCAGCCGGTCAAGGCTTCCGCGTACGCGGAAGGATACGGCGTCGTTCGGCCAGCTGGGGTGCCCGATAATGCGGCTTACACGCAGGTGGCGTATGATAGTGCGAGTGGGAGACAGGTTTACTATACTGCGCCGGGAGGGGTGGTCCACGCGCCCCCTTACCAAGGAGTTCCACCGGTGGTTAGTGCGGACGGGAGACCGGTTGGAGTTTCGTTGGGCCAGGATGTTAAAGTGGTTAACAAGGTTTCCCAAGGTTCTGTGTGA 1464 0.5861 MENYQYPSYPDSGDSSPRSREIDFENPPPWDEQQQQNQNYKAKFMCSYGGKIQPRTHDNQLSYVGGETKILAVDRNIKFPAFLSKLAALCDATPQDLTFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLYRPSSKPVRMRLFLFTLSSNPNSSFSSDRDRFVEALNSAPLPPQPDPVKNPPVPPSNVDYLFGLDKAVAPPPHPPSFAAVKFHDPVPEPVAPPPEYQSRGGAVDRVVGSDPNVNPIEIQRQLQQEMQRLQIAESDYRRRSEDGFAGGYAGGGGGADYYLQKLPEKVPPSNSPAGVPHPAGYWPEKQFSGEGFQTTMTTAAGGGDQPVYVIPAPGTFYHAPMVRPPAAQVTQGYYTVQRMGSDAYREQPVYGGVAPPKAAFSSAGPASMAPAQPVKASAYAEGYGVVRPAGVPDNAAYTQVAYDSASGRQVYYTAPGGVVHAPPYQGVPPVVSADGRPVGVSLGQDVKVVNKVSQGSV* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1940 487 CDD PB1_UP2 45 145 - -
Apr3g1940 487 Gene3D - 62 146 - -
Apr3g1940 487 MobiDBLite consensus disorder prediction 1 36 - -
Apr3g1940 487 MobiDBLite consensus disorder prediction 1 15 - -
Apr3g1940 487 PANTHER OS05G0427100 PROTEIN-RELATED 1 483 - -
Apr3g1940 487 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN PROTEIN 1 483 - -
Apr3g1940 487 SMART PB1_new 56 147 IPR000270 GO:0005515
Apr3g1940 487 Coils Coil 249 269 - -
Apr3g1940 487 Pfam PB1 domain 57 145 IPR000270 GO:0005515
Apr3g1940 487 SUPERFAMILY CAD & PB1 domains 57 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1940 Apr-Chr3 35419484 35421369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1940 40 168 MAP Kinase Kinase Kinase AT5G57610 43.382 2.15e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1940 - - adu:107480527 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1940 3 35419484 35421369 Apr1g1283 1 21748364 21750175 PCT