Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1931 ATGGAGATTCCATCGATCAGAGGGTTACTTGATATGGAAATAATGGAGGATCCTACCTTTCTCCATCAGTGGCACTTGAATTCTATTGATGAGCCTAGCTTATTGCCAATAGCTGCTGCTTTTGGAGAAACATTACAACATCATGCATTTACTTACCCAAACTCGAACCCCAAAACTTCAATGGAAACTGCACTTGTTGATATGGATAGACCCACAAAACATCTCAAAAATAACAGCTGGAATCCCAGCAAAACTGCCCAAACATCAGAGACACAATTTGTTTCTTTTCCAAATCTCCTTTCATTTGTGGATTCCAATCACATAAATCCATTGGGATTTCTGAAGCCTAAGGATGAGATGGTTTGTCCTAAAACCAATAACACAATTCCTCCAGACATGATCACCCAAGGAACCTTGTGTAATCAAAACTGTGTCTTCAAAACCTGCCAAGAAACCAAAAAGATTGAGACACGTCCTAAACTTTCTCAACCTCAAGACCACATAATAGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTTTATCTGCTCTAGTTCCTGGACTACAAAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAGTACTTGAAGCAATTGCAAGATAAAGTGAGGGCTCTTGAGGAGGAACAAAACATGAAGAAAAATATGGAATCTGTGGTAATTGTGAAAAAATCTCAACTATCCAATGATGCTGAAAACTCATTTTCTGAATCTGATGGTTTATTTGATGAGGCACTGCCTGAAATTGAAGCAAGATTTTGTGAGAGAAATGTCCTCATAAGAGTTCACTGTGAGAAGAGCAAAGGAGTTGTAGAAAACATAATCCATGCAATTGAGAAAGTCCATTTGAAAGTCACCAATAGCAGTGCCATGACATTTGGGCGGTGCGCCCTTGATATAACAATTATTGCTCAGATGGATATGGAATTTTGCATGGGAGTGCAGGATCTTGTGAGAAACCTACGCTCAACTTTTACATCTTTCATGTGA 1026 0.3977 MEIPSIRGLLDMEIMEDPTFLHQWHLNSIDEPSLLPIAAAFGETLQHHAFTYPNSNPKTSMETALVDMDRPTKHLKNNSWNPSKTAQTSETQFVSFPNLLSFVDSNHINPLGFLKPKDEMVCPKTNNTIPPDMITQGTLCNQNCVFKTCQETKKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQDKVRALEEEQNMKKNMESVVIVKKSQLSNDAENSFSESDGLFDEALPEIEARFCERNVLIRVHCEKSKGVVENIIHAIEKVHLKVTNSSAMTFGRCALDITIIAQMDMEFCMGVQDLVRNLRSTFTSFM* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1931 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 211 IPR011598 GO:0046983
Apr3g1931 341 Pfam Helix-loop-helix DNA-binding domain 165 212 IPR011598 GO:0046983
Apr3g1931 341 Coils Coil 201 231 - -
Apr3g1931 341 SMART finulus 168 217 IPR011598 GO:0046983
Apr3g1931 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 227 IPR036638 GO:0046983
Apr3g1931 341 CDD bHLH_AtNAI1_like 165 237 - -
Apr3g1931 341 PANTHER BHLH TRANSCRIPTION FACTOR 2 340 - -
Apr3g1931 341 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 340 - -
Apr3g1931 341 Gene3D - 161 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1931 Apr-Chr3 35314969 35317280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1931 1 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.722 2.42e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g1931 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1931 - - vun:114179595 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1931 3 35314969 35317280 Apr3g1931 3 35314969 35317280 ECH
Apr3g1931 3 35314969 35317280 Apr1g1292 1 21847877 21850497 PCT