Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1907 ATGAGCTGGACTACCTTGGTTTTGATAATAGGAATTTGCATAGGCTTTGTGGTTGGGGTGGGTTTTGCGTTTTCTCTGTTATTCTGCATCAGGTGTGGAAAGAAGCATAAAAATGTGAAGAGGGTCAGTTCTAAGAGAGGAGCGAGCATTCCTGTTCATGTCAATGGGGCTGAGTCCAGCTCAGCATTATCAGAAGGTCTGGAATCTCCCAGAACATCTGAGTGGAGTAATACGCCTTTCTGGTTGGAAGGACTTAGGAGGAAGAATGAAGCTTCAATATGTGGAATTCCCAAGTATTCTTACAAGGATATACAAAAGGCTTCTTCAAATTTCACAATTATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCACAGATATCTACAGGTGAGGCAGTTGCAGTTAAAGTTCTTGGTGCTAATTCAAAACAAGGAGAACAGGAATTTTTAACCGAGGTTTTATTACTTGGAAGATTACATCACAAAAACCTTGTGGAATTGGTGGGCTATGCAATAGAAAGAGGACAGCATATGCTTCTTTACATTTACATGAGCAACGGCAGTCTAGCTTCCCATTTATATGGCAAAAATCACGTGCCATTGAACTGGGATTTGAGGCTTAGCATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTATGGGGCTTCTCCACCTGTTGTGCACCGTGACATAAAATCTTCCAATATACTGCTGGACCAGTTTATGAGAGCAAAGGTCACTGACTTTGGGCTTTCCAGACCAGATATAGCCAAACCTCGCATGTCAAACGTCAGAGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAAAACCTTCACTAAGAAAAGTGATGTTTTTAGTTTTGGTGTGCTACTGTTTGAACTTATCACTGGCAGGAATCCACAGCTAGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGAAAAAAATAAGGTTGGATGGGAAGAAATTGTGGATTCGCGACTGAATGGAAAATATGATGTGCATAAGCTTAATGACATGGCTTCACTTGCATTCAAATGTGTCAATGAAGTCTCCAAAAGCCGACCTCCAATGAAAGATGTTGTTCAAGCATTATCTCAGCTTTGTAAGAGGCGTAAGAAAAATCTTAGACGAAAATCTCCTGCTGCATTAAGGGAATTGTCCATTGAAGTGGGCCAACTAGAAACTCGTGACTTTTCATCAATAGAAAGTTCAAAGGTGCTGCGCAGATTGCATAGTCGTTAA 1269 0.4098 MSWTTLVLIIGICIGFVVGVGFAFSLLFCIRCGKKHKNVKRVSSKRGASIPVHVNGAESSSALSEGLESPRTSEWSNTPFWLEGLRRKNEASICGIPKYSYKDIQKASSNFTIIIGNGAFGPVYKAQISTGEAVAVKVLGANSKQGEQEFLTEVLLLGRLHHKNLVELVGYAIERGQHMLLYIYMSNGSLASHLYGKNHVPLNWDLRLSIALDVARGLEYLHYGASPPVVHRDIKSSNILLDQFMRAKVTDFGLSRPDIAKPRMSNVRGTFGYLDPEYLSTKTFTKKSDVFSFGVLLFELITGRNPQLGLMEYVKLAAMEGEKNKVGWEEIVDSRLNGKYDVHKLNDMASLAFKCVNEVSKSRPPMKDVVQALSQLCKRRKKNLRRKSPAALRELSIEVGQLETRDFSSIESSKVLRRLHSR* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1907 422 SUPERFAMILY Protein kinase-like (PK-like) 95 373 IPR011009 -
Apr3g1907 422 CDD STKc_IRAK 115 376 - -
Apr3g1907 422 Pfam Protein tyrosine and serine/threonine kinase 114 373 IPR001245 GO:0004672|GO:0006468
Apr3g1907 422 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 3 407 - -
Apr3g1907 422 SMART serkin_6 109 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1907 422 ProSiteProfiles Protein kinase domain profile. 109 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1907 422 PANTHER OS01G0253100 PROTEIN 3 407 IPR045271 GO:0004714|GO:0006468
Apr3g1907 422 Gene3D Transferase(Phosphotransferase) domain 1 185 396 - -
Apr3g1907 422 Gene3D Phosphorylase Kinase; domain 1 84 184 - -
Apr3g1907 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1907 Apr-Chr3 35152664 35156623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1907 95 377 Receptor kinase-like Gene Family AT3G19300 42.069 1.29e-72 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Apr3g1907 PK_Tyr_Ser-Thr 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1907 - - gmx:100816549 615.535