Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1902 ATGGGACAAGTATATGAAGATAGACTATACGTGTCCTTAGATGAGTTAGGTTTTGATGCTGAAAACGCTACCAACAGGGGAAAGATGAGGAGAAATAACTATGATTATGACACCAAAGTCTTCAAATCTAAGAACCTTGAAACGGAAAGGAAGAGGAGGGAGAAGCTTAGTTCCAGGCTATTGATGCTGCGGTCTTTAATGAACAAAGCAACCATTGTTGAGGATGCCATCACTTACATCAACATGTTGCAAGACAAAGTTCAGAGTCTCACCCAAGAGCTTCAAGAAATGGAAGCAACTTCGGAGGAAATAACAGAGCCAAAGAGAGATGAATTTAATGCATCAGAAGAGATGAAGAAATGGGGAACACTGATTCAAGAAGAGGTTCAGGTGACAAAAATTGGTGGGAATAAAATGTGGGTGAAGATGATCATTGAGAAGAAAAGGGGAAGGTTCAAGAAATTGATGGAGACCATGAATACTTCTGGCATTGAGCTGATAGATACCAATGTAACAACTATAAATGGAGCCTTTCTTATTACAACCTGCATGCAGGGCTTGGACGAGAAAACACGTGAAGTTCAGCAAACCGAAGAGTTATTGCTAGATATAATCAGTGGCACACAGAGCAATTGA 636 0.4025 MGQVYEDRLYVSLDELGFDAENATNRGKMRRNNYDYDTKVFKSKNLETERKRREKLSSRLLMLRSLMNKATIVEDAITYINMLQDKVQSLTQELQEMEATSEEITEPKRDEFNASEEMKKWGTLIQEEVQVTKIGGNKMWVKMIIEKKRGRFKKLMETMNTSGIELIDTNVTTINGAFLITTCMQGLDEKTREVQQTEELLLDIISGTQSN* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1902 211 Coils Coil 80 100 - -
Apr3g1902 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 100 IPR036638 GO:0046983
Apr3g1902 211 SMART finulus 46 89 IPR011598 GO:0046983
Apr3g1902 211 PANTHER TRANSCRIPTION FACTOR DYT1 12 207 - -
Apr3g1902 211 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 12 207 - -
Apr3g1902 211 Gene3D - 39 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1902 Apr-Chr3 35049901 35050884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1902 41 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 46.369 2.39e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g1902 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1902 - - gmx:100793107 202.986