Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1900 ATGGCAAATCCTTTATTCCCACATCAAAACCCTAATCCACCGCCTCATATTAAGGGAAAGCCGTCTTCAAAGAGAAAGGTTAGGGAGCCAAAGGAGGAAAATGTGACTCTTGGTCCTGCTGTCAGAGACGGTGAACATGTTTTTGGTGTGGCTCGCATCTTTGCATCATTTAATGACACCTTCATTCATGTGACTGATTTGTCTGGAAGGGAAACACTTGTCCGCATTACTGGTGGAATGAAGGTTAAAGCTGACAGAGATGAGTCATCTCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCTGCCAGGTGTAAGGAGTTGGGCATAACTGCTCTTCATATTAAGCTACGCGCAACTGGGGGTAACAAGACAAAAACACCTGGTCCTGGTGCTCAGTCTGCTCTACGAGCCTTGGCTCGATCAGGAATGAAAATTGGTCGCATAGAGGACGTGACCCCAATTCCTTCAGATAGCACCCGTAGAAAGAGTGGTAGGAGGGGTAGAAGGCTTTGA 516 0.469 MANPLFPHQNPNPPPHIKGKPSSKRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1900 171 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 17 168 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr3g1900 171 MobiDBLite consensus disorder prediction 151 171 - -
Apr3g1900 171 ProSitePatterns Ribosomal protein S11 signature. 136 158 IPR018102 -
Apr3g1900 171 Hamap 30S ribosomal protein S11 [rpsK]. 18 168 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr3g1900 171 Pfam Ribosomal protein S11 49 167 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr3g1900 171 Gene3D Ribosomal protein S11 22 171 IPR036967 GO:0003735|GO:0005840|GO:0006412
Apr3g1900 171 SUPERFAMILY Translational machinery components 44 169 - -
Apr3g1900 171 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 14 171 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr3g1900 171 MobiDBLite consensus disorder prediction 1 34 - -
Apr3g1900 171 PANTHER BNAA05G27530D PROTEIN 14 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1900 Apr-Chr3 35038781 35040968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1900 23 160 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 91.304 2.73e-91 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1900 K02955 K01000 gmx:100785807 265.003