Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1899 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTGGTGGAGTAGTATTGATTCAACAAGAAGTGTTTTCCCTCTAGGCTCAACTTCACCTTGTTCTGTTGCAGCTAATGATATAGGAAACTATAGCACTCGGCAAACTTCTGATATCATGGATTTGAAGGCAATAAAGTGTTCTGCTGAAGAGACTAACAATAATTTGGTTTCTGATAGTTACCTGGGTTTTGTTGATGCACAGAAGCCACAAAAGAGTGAATCAGCCAGTGAAAGTGGTAGCATATTGATAGATTCCACCATACAGATGATGGGTTTTGGCCTCACATCTCCATCTTCAGCGAATTGGAATCAGCCTCCATTATTTCGTTGTAATGGAAGGTCAGAGAGCAATTTCCATTCCATGCTTCAAGAAGAAACGGGTATAGATTCTTCTAATTCACAAATTCAAAGGGATTGGATCCCAAAGAGCTTCTCATCAACTAGTGGTGGAACCCAAGTTTCCACCGTTGATACTTTCAAACCAATGAACCAAGACTTTTCCATATATCAACGAAGTCTAAGTTCTTTAACCAGCACTGAGATATCAGATCGTAGTTTCCCAATTGGATCAGCCTCGTATGGTAGCCCTTCAACGTTGATGCAAAGCTTATATGATGAACCTCAACCACAACTACAGCACCCACTTTTCACCAACCGTCCCATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTCCAATGAAATACCGCCAATATGGTCTAAAGTTTCCACTTTTTTGAAGCCCACACCAATTGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAATACTCCTTTCTGGAATGCTTCGGCCGAGGCACTTAACGACATAAGAGCAGGTACTTCTGCTTCATCACAATCACAGTATCAAACTCCAACTTTTGAAGAGAAACCCAATTGCCCAAGCTCTCTATTAAACAAGCTTAAGAGTGAAGAAACTCTAGATTCGGCATCAATGGAGAAGCAAAATGTTTGTGAAGCAGCATTAAAGAGGCCAAGAATTGAAACTCCATCCCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACTGCATCCGTTCTTCATGAAGCCATTGAGTACATCAAGTTTCTTCACGATCAAGTCAATGTTTTGAGTACTTCATATATGAAAAGTGGAGCTCCCATTCAACAGCAGCAGGGCTGTGATGATGTGAACGAATCAGAAGGACCAAAACAAGATTTGAAAAGCCGAGGGCTGTGTTTGGTACCGATTTCAAGCACATTTCCGGTGGCAACAGAAACCACTGCTGATTTCAGCTGGACGCCTACATTCAGAGGCGCACTTCCAAGGAGGATGAAGCAAATGTGA 1431 0.4235 MAEEFQARICGENWWSSIDSTRSVFPLGSTSPCSVAANDIGNYSTRQTSDIMDLKAIKCSAEETNNNLVSDSYLGFVDAQKPQKSESASESGSILIDSTIQMMGFGLTSPSSANWNQPPLFRCNGRSESNFHSMLQEETGIDSSNSQIQRDWIPKSFSSTSGGTQVSTVDTFKPMNQDFSIYQRSLSSLTSTEISDRSFPIGSASYGSPSTLMQSLYDEPQPQLQHPLFTNRPMSYSSKASYGTPSNEIPPIWSKVSTFLKPTPIAKQHPIGLHFSNNTPFWNASAEALNDIRAGTSASSQSQYQTPTFEEKPNCPSSLLNKLKSEETLDSASMEKQNVCEAALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKSGAPIQQQQGCDDVNESEGPKQDLKSRGLCLVPISSTFPVATETTADFSWTPTFRGALPRRMKQM* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1899 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 416 IPR036638 GO:0046983
Apr3g1899 476 PANTHER TRANSCRIPTION FACTOR BHLH123 78 459 - -
Apr3g1899 476 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 78 459 - -
Apr3g1899 476 CDD bHLH_AtbHLH_like 355 406 IPR045239 -
Apr3g1899 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Apr3g1899 476 Gene3D - 359 424 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1899 Apr-Chr3 35030566 35033974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1899 275 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 54.854 4.62e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1899 - - gmx:100784084 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1899 3 35030566 35033974 Apr1g1324 1 22173229 22176129 PCT