Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1897 ATGGCAACTCATCTTCCCGACCACTTCAAGTGTCCAATTTCGCTAGAAATAATGTCGGACCCTGTCATCCTCTCTTCGGGTCACACCTTCGACCGTTCCTCAATCCAACGGTGGCTCGACGCTGGCCACCGCACATGTCCAATTACCAAACTACCCCTCCCAGACCAACCTTCCCTCATCCCCAACCACGCTCTCCGAAGCCTAATCTCCAACTACACCTTGCTCTCACCCCTTCACCAAAACATTTCCCTTTCCCACCCCGAAACCCTAATTTCCACCCTGGCTTCTCCCTCTTCAACCCTCGATTCCAAAATCGACGCGCTGCGCCACCTCACGCGCCTCTCCAAGCGCGACTTTGTCTTCCGCCGCCGATTAACAGACTTCGGCGCCGTCTCCGCCGTCCTAGCCGCCGTCGACGATCCCCTCTTGCAGGAGAAGGCGCTCCCGCTTCTCCTCAACCTCACTCTCGACGACGACTCCAAAGTCGGCCTCGTCGCCGAGGGCGTCGTGGCGCGCATCGTCGCCGTACTCCTCTGCGGCGCGTCGCCCGATTGCCGCGCAGTCGCGGCGACGATCGTCACGAGCCTCGCCGTGGTGGAGGTGAACAAGGCGACGATCGGCGCGTTCCCGGCGGCGATCGGAGCACTGGTGGCGATTCTCCGGGAAGGCAAGGGGAGGGAGAAGAAGGAGGCGGCGACGGCGCTCTACGCGCTCTGCTCTTTTACCGATAACCGGAGACGAGCGGTGGATTGCGGGGCTGTGCCAATTTTGCTGAGGAATGTGGATTGTGGGCTTGAAAGGGGTGTTGAGGTTATTGGCGTTTTGGCAAAGTGTAAGGAAGGGAGGGAACAGATGGAAGGTTATGATGGATGCGTGCAGATTCTGGGTCGTGTTTTGAGGAATGGTAGCTCAAGGGGGATTCAGTATGCACTGTTGGCACTCACTTCGCTTTGTTTTTATAGCCAGCGAATGGTTTTGGTGGCTCTTGAAGAAGGGGTTCTGGAAGTTTCTTTTGGGTTGTTGGAAGATGATAATGAGAAAGTGAGGAGGAATTCCTCTAATTTGATTCGGGTTCTGCGTGGCAACAATCACCACCGGCTGAAGTGA 1107 0.5673 MATHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDQPSLIPNHALRSLISNYTLLSPLHQNISLSHPETLISTLASPSSTLDSKIDALRHLTRLSKRDFVFRRRLTDFGAVSAVLAAVDDPLLQEKALPLLLNLTLDDDSKVGLVAEGVVARIVAVLLCGASPDCRAVAATIVTSLAVVEVNKATIGAFPAAIGALVAILREGKGREKKEAATALYALCSFTDNRRRAVDCGAVPILLRNVDCGLERGVEVIGVLAKCKEGREQMEGYDGCVQILGRVLRNGSSRGIQYALLALTSLCFYSQRMVLVALEEGVLEVSFGLLEDDNEKVRRNSSNLIRVLRGNNHHRLK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1897 368 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Apr3g1897 368 Gene3D - 85 210 IPR011989 -
Apr3g1897 368 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Apr3g1897 368 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 365 - -
Apr3g1897 368 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Apr3g1897 368 Gene3D - 211 366 IPR011989 -
Apr3g1897 368 PANTHER U BOX DOMAIN-CONTAINING 3 365 - -
Apr3g1897 368 SUPERFAMILY ARM repeat 88 359 IPR016024 -
Apr3g1897 368 CDD RING-Ubox_PUB 9 50 IPR045210 -
Apr3g1897 368 SUPERFAMILY RING/U-box 4 73 - -
Apr3g1897 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1897 Apr-Chr3 35001785 35003402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1897 1 361 U-box Gene Family AT4G21350 58.919 2.93e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1897 - - gmx:100813349 574.318