Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1893 ATGAAGAAACCTAGTCCAAACACCTTAACATCATCCCAGTTCCTCAGAACCAACCAAACCCTCGTGTCACTCAATTCAATTTTCGAACTGGGTTTCTTCTCCTACACCAATTCCACCTGGTACTTGGGTATATGGTACAAAACCATTCACGATGACACAGATAAAACAGTGGTTTGGGTAGCCAACAGAGACACCCCACTTGAGAATTCCACTGGATTTCTCAAAATAGGCGACAAAGGAAACCTCGTCCTCTTCGATCAATCCCAGAAACCTGTTTGGTCCTCGAATCAAACCACCGCAACTACCATCAACCCAATTCTTCAGCTTTTGGATTCTGGAAACTTGGTTCTCAGAGAAGCAAACAACAATGATCCCACAAAGTTTCTTTGGCAAAGCTTCGATTACCCAACAGATACCCTTTTACCCGGGATGAAGCTTGGATGGAACTTCGACACAGGCATGGAGAGACACATAACCTCGTGGAGGGCCACAAGCCGAGACCCTTCAAGCGGAGATTTTTCCTTCAAGCTAGATTACCGTGGCCTCCCAGAGATCTTCTTGTGGAACAAAGACGAGAGAATCTATAGAAGTGGACCTTGGAATGGAGAGAGATTCAGCGGGGTACCCGAGATGCATCCCGTTACAGATTCCATTAAATTCTCGTTCTTTGTGGATCAACACGAGGTGTACTACACATTCTCAATTGGGAATCAATCCTTGTTTTCGAGACTCTCTGTGAGTTCCGTTGGGGAACTCCAACGCCTCACGTGGATACAAAGCAGCGAGGTTTGGAACAAGTTTTGGTATGCACCGAAAGACCAATGTGATAACTACAAAGAGTGTGGTCCATTCGGGATCTGTGACACGAATGCTTCACCGGTTTGCCAGTGTGTGAAAGGGTTCCGACCCATGAACCAGCAAGCCTGGAATTTGAGAGATGGGTCTGATGGGTGTGTAAGGAACACAGAATTGGGGTGCGAGAGCGACAGGTTCTTGCATCTGAAAGACGTGAAGTTGCCAGAGACAACCTCGGTGTTCGTGAATAGGAGCATGAGTTTAATGGAATGTGGGGATTTGTGTCACGGGAATTGTTCTTGCACTGCTTATGCCAACATTGAGGTCACTAATGGAGGAACTGGTTGTGTTATATGGGTTGGGGAGCTCTTAGACATGAGGCAGTACCCTGCAGGAGGCCAAGATCTCTATGTCAGATTAGCAGCTTCTGATGTAGATGACATAGGGTCTGAAGGAGGTTCTCACAAGGCGATTGATACAGCTAAAGCTGTTGGTATCATAGTTGGTGCTGCAGCTTTTATGCTTTTGGCAGTGGGTCTCTTTATCTTATGGAAGAAGAGGAAATTGCATTGTATATTGAAAGGGAAGACAGAACACAGAGGTTTTCCGGAAAGAAGTCAAGATTTGTTAATGAGTGACGTGGTGTTTTCAAGTAATAGAGAACAATCAAGTGAAAGGAACTTGGAAGATCTAGAGTTGCCATTCTTTGATTTTAATACCATAACAACGGCTACAAACAACTTCTCTGAAGAGAATAAACTTGGACAAGGAGGCTTTGGAAGTGTTTACAAAGGCTGTTTGATGGAAGGTCAAGAAATTGCTGTGAAGAGATTATCAAAAAATTCTGGGCAAGGCATTGAAGAATTCAAGAATGAGGTCAAGTTGATTGTCAAGCTTCAACATCGGAATCTTGTAAGACTACTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTAGTGTACGAATACATGGAAAATAGAAGCCTTGATGCCACTTTGTTTGACAAAGCAAAAAGATCATCATTGGATTGGCAAAGGCGCTTCAACATTATATGTGGAATAGCAAGAGGGCTTCTTTATCTGCACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAGATGAACCCAAAGATATCAGACTTTGGGATGGCAAGAATTTTTGGCACGGATCAGACAGAAGCAAATACAGTTAGAGTGGTTGGTACATATGGCTATATGTCCCCTGAATATGCTATGGATGGAATCTTCTCAGTTAAATCCGATGTTTTTAGTTTCGGGGTTCTTGTGCTGGAGATCATAAGTGGAAAAAAAAATAGAGGGTTCTATTATGCAAACAAGGAATTGAATCTTCTAGGCCATACATGGAAGCTGTGGAAAGAAGGAAATGCATTGGAACTGATAGATTCGTCTATTGACAATTCATATTCACCATCTGATGTTCATAGATGCATACAGGTTGGGCTCTTATGTGTTCAAGAACGTGCAGAAGACAGACCAACAATGTCTTCAGTGGTGTTGATGCTGAGTAGTGATACTGCATCAATGCCACAACCCAAAAATCCTGGGTTTTGCTTAGGAAGAAATCCTATGGAAACTGATACTTCTTCAAGTAAACAAGATGAATCATGCACTGTGAACCAAGTCACAGTCACAATGGTAGATGCTAGGTAG 2499 0.4306 MKKPSPNTLTSSQFLRTNQTLVSLNSIFELGFFSYTNSTWYLGIWYKTIHDDTDKTVVWVANRDTPLENSTGFLKIGDKGNLVLFDQSQKPVWSSNQTTATTINPILQLLDSGNLVLREANNNDPTKFLWQSFDYPTDTLLPGMKLGWNFDTGMERHITSWRATSRDPSSGDFSFKLDYRGLPEIFLWNKDERIYRSGPWNGERFSGVPEMHPVTDSIKFSFFVDQHEVYYTFSIGNQSLFSRLSVSSVGELQRLTWIQSSEVWNKFWYAPKDQCDNYKECGPFGICDTNASPVCQCVKGFRPMNQQAWNLRDGSDGCVRNTELGCESDRFLHLKDVKLPETTSVFVNRSMSLMECGDLCHGNCSCTAYANIEVTNGGTGCVIWVGELLDMRQYPAGGQDLYVRLAASDVDDIGSEGGSHKAIDTAKAVGIIVGAAAFMLLAVGLFILWKKRKLHCILKGKTEHRGFPERSQDLLMSDVVFSSNREQSSERNLEDLELPFFDFNTITTATNNFSEENKLGQGGFGSVYKGCLMEGQEIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDATLFDKAKRSSLDWQRRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDQTEANTVRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIISGKKNRGFYYANKELNLLGHTWKLWKEGNALELIDSSIDNSYSPSDVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSDTASMPQPKNPGFCLGRNPMETDTSSSKQDESCTVNQVTVTMVDAR* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1893 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 202 IPR036426 -
Apr3g1893 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Apr3g1893 832 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 7 831 - -
Apr3g1893 832 Pfam Receptor serine/threonine kinase 469 503 IPR022126 GO:0004674
Apr3g1893 832 CDD B_lectin 12 136 IPR001480 -
Apr3g1893 832 Gene3D - 2 133 IPR036426 -
Apr3g1893 832 Pfam Protein tyrosine and serine/threonine kinase 516 782 IPR001245 GO:0004672|GO:0006468
Apr3g1893 832 SUPERFAMILY Protein kinase-like (PK-like) 492 784 IPR011009 -
Apr3g1893 832 SMART ntp_6 326 405 IPR003609 -
Apr3g1893 832 Pfam S-locus glycoprotein domain 195 304 IPR000858 GO:0048544
Apr3g1893 832 SMART serkin_6 513 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1893 832 PIRSF SRK 2 832 IPR024171 GO:0004674
Apr3g1893 832 SMART blect_4 12 136 IPR001480 -
Apr3g1893 832 Pfam PAN-like domain 326 391 IPR003609 -
Apr3g1893 832 CDD STKc_IRAK 519 784 - -
Apr3g1893 832 CDD PAN_AP_plant 322 406 - -
Apr3g1893 832 ProSiteProfiles Bulb-type lectin domain profile. 6 130 IPR001480 -
Apr3g1893 832 PANTHER - 7 831 - -
Apr3g1893 832 Gene3D Transferase(Phosphotransferase) domain 1 589 795 - -
Apr3g1893 832 ProSiteProfiles PAN/Apple domain profile. 326 406 IPR003609 -
Apr3g1893 832 Gene3D Phosphorylase Kinase; domain 1 476 588 - -
Apr3g1893 832 Pfam D-mannose binding lectin 56 162 IPR001480 -
Apr3g1893 832 ProSiteProfiles Protein kinase domain profile. 513 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1893 832 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524
Apr3g1893 832 Pfam Domain of unknown function (DUF3403) 786 832 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1893 Apr-Chr3 34920681 34928607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1893 501 827 Receptor kinase-like Gene Family AT4G11530 59.337 7.47e-134 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr3g1893 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1893 - - aprc:113860154 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1332 1 22260663 22264615 Apr3g1893 3 34920681 34928607 PCT