Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1890 ATGGGCATGACCATTAGAACCAAAGATGCAATTTTTATGTTCTCTTTGTTCTCCTTCCTCTGTTTTTATACTCTGTTTTCACATGCAGCCAATTCCATCACACGGGGAAAATCTATCAGAGATGGTGACACTTTGGTGTCAGAAGGTCTCAACTTCGAAATGGTTTTCTTCGGTTTTGATAATTCCTCTTCAAGATACGTTGGGATTTGGTACTATAAGATTCCTAGTTTAGCGTATGTATGGGTTGCAAATAGAGAAAACCCCGTCAACGGCAAAGGAGGTGCTATCACAATGAAAAGTGATGGTAACTTGGTTGTCCTTGATGGAGAGAACAAAGAAGTGTGGTCGAGTAACGTGTCAATTCCTATGAACAACTCAGAGGTTGTTCTTAAAGATGATGGCAACCTTGTTCTTTCAGACACAGAAAAATTGGTGTGGCAAAGCTTCGAGGACCCAACTGATTCATTTCTGCCAGGTATGCAAGTTCCTGCTAGTGGTGGAATGAGGCATGAACCTTCTTTCAGGTCGTGGAAATCAGCAACGGATCCTTCACCGGGGAACTTCACAATGGGGGTTGATTCTGAGGCAGCACCACCACAGATAGTGATTTTCGAGGGAGAGAAAAGGAGGTGGAGAAGTGGGTATTGGGATGGTAGAGTATTCACAGGTGTGTCCAATATGACAGGAAGTTATCTATATGGTTTTAGACTTAATACTGATGATAACGGTGGAAGGTACATTGTATATGACAAATTGAATAAAAATGATAAGGTGAGGTTTCAGGTAGGTTGGGATGGATATGAAAGGAGGTTCTTGTGGAATGAAGATGAGAAACGATGGATTGTTACACAAAGTGAGCCTTATTATCAATGTGAGTTTTATAATTTTTGTGGAAGTTTTGCAGTGTGTGATTTGTCTAATTCACCTGTCTGTAGTTGCATGCAAGGGTTTGAACCAAGGAATAGGGATGAATGGAATAGTGGGAATTGGTCTGGGGGGTGTGAGAGGATGACTCCGCTGAAGGCTGAGAGAGCTAGTAATGGTTCTGGAACAATGGTCAGTGTTGGAGAAGATGGTTTCTCGGAGCGAAAGTTTATGAAGTTGCCAGATTTTGGACATTTGGTAAATGCTTTTGACAATGAGGACTGTGAGCGCAGTTGTCTGCAAAATAGTTCTTGTACTGCATATGCAAATAATCTTGGAATTGGGTGCCTGCTTTGGTATGGGGAGTTGGTTGATGTTCAACACTTAGACAATCTTGGAAATGTACTGAACATCCGTCTTGCTGAATCTGATTTAGGTGATGGGGAGAAAAAGACCAAGATTTGGATAATATTAGCTGTTGTGGTGGGGTTGATCTGCCTTGGAATCCTTTTATTGCTTGTATGGAGGTTTAAGGGAAAATTCAAAGTTTCCTCAGTTTCTGCTCGCAACAATAGTAGTAATATACCAGTCTTTGAACCAACCAAGAGTAAAGACTTATCAGCAGAATTTTCAGAATCAGCCGAGCTCAGCTTGGAAGGGAATCAACTAAGTGGAGCAGAACTTCCATTGTTCAATTTTAGTTGCATTTTAGTAGCAACAAACAATTTCTCAGAAGAAAATAAGCTTGGACAAGGGGGATTTGGTCCTGTCTACAAGGGAAAGCTTCCAGGGGGAGAACAAATAGCTGTCAAGAGGCTTTCAAGACGGTCTAGCCAAGGTTTAGAGGAGTTCAAAAATGAAATGATGCTATTTGCCAAATTACAACACAGAAATTTGGTTAGACTATTGGGATGTTCCATTCAAGGGGAAGAAAAATTACTAATATATGAATACTTGCCAAACAAAAGCTTAGACTGTTTTTTATTTGATCCAGTCAAGCAAACACAACTAGACTGGGCAAGGCGCTGTGAAATCATTGAGGGCATTGCAAGAGGGCTACTTTATCTGCATCGGGATTCAAGACTTAGAATAATTCATCGAGATCTAAAAGCAAGCAATATTTTGTTGGATGAAAACATGAACCCAAAAATTTCAGACTTTGGGTTGGCTAGGATATTTGGGGGAAACCAAAATGAAGCCAATACAACCAGAGTGGTTGGTACATATGGTTATATGTCTCCAGAATATGCAATGGAAGGTCTATTTTCAGTCAAATCTGATGTCTATAGTTTTGGAGTATTATTACTAGAGATTGTAAGTGGTCGCAAGAACACTAGCTTCCGGCACTCAGACGATTCAAGCCTCATAGGATATGCCTGGCATCTTTGGAGTGAACAGAGAATAATGGAGCTTGTTGATCCTTCCATTCACGATTCAACCCCAAAGAGTAAAGCTTTGAGGTGCATACACATAGGGATGCTATGCGTGCAAGATTCAGCTGCTCATAGACCAAACATGTCATCCGTGGTGTTAATGCTGGAAAGTGAAGCCACAACTCTTCCCTTGCCAAAACAACCTTTGCTTACTTCCATGAGGAGATATGAAGATAAAGAATTTTACACCGAAGGTCTTGATGTGTCAAATGATTTGTCAGTTACAATGGTGACAGGGAGATAG 2541 0.4081 MGMTIRTKDAIFMFSLFSFLCFYTLFSHAANSITRGKSIRDGDTLVSEGLNFEMVFFGFDNSSSRYVGIWYYKIPSLAYVWVANRENPVNGKGGAITMKSDGNLVVLDGENKEVWSSNVSIPMNNSEVVLKDDGNLVLSDTEKLVWQSFEDPTDSFLPGMQVPASGGMRHEPSFRSWKSATDPSPGNFTMGVDSEAAPPQIVIFEGEKRRWRSGYWDGRVFTGVSNMTGSYLYGFRLNTDDNGGRYIVYDKLNKNDKVRFQVGWDGYERRFLWNEDEKRWIVTQSEPYYQCEFYNFCGSFAVCDLSNSPVCSCMQGFEPRNRDEWNSGNWSGGCERMTPLKAERASNGSGTMVSVGEDGFSERKFMKLPDFGHLVNAFDNEDCERSCLQNSSCTAYANNLGIGCLLWYGELVDVQHLDNLGNVLNIRLAESDLGDGEKKTKIWIILAVVVGLICLGILLLLVWRFKGKFKVSSVSARNNSSNIPVFEPTKSKDLSAEFSESAELSLEGNQLSGAELPLFNFSCILVATNNFSEENKLGQGGFGPVYKGKLPGGEQIAVKRLSRRSSQGLEEFKNEMMLFAKLQHRNLVRLLGCSIQGEEKLLIYEYLPNKSLDCFLFDPVKQTQLDWARRCEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTTRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEIVSGRKNTSFRHSDDSSLIGYAWHLWSEQRIMELVDPSIHDSTPKSKALRCIHIGMLCVQDSAAHRPNMSSVVLMLESEATTLPLPKQPLLTSMRRYEDKEFYTEGLDVSNDLSVTMVTGR* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1890 846 Pfam D-mannose binding lectin 79 178 IPR001480 -
Apr3g1890 846 PIRSF SRK 3 846 IPR024171 GO:0004674
Apr3g1890 846 SMART serkin_6 531 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1890 846 ProSiteProfiles Protein kinase domain profile. 531 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1890 846 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 3 846 - -
Apr3g1890 846 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 846 - -
Apr3g1890 846 CDD PAN_AP_plant 357 429 - -
Apr3g1890 846 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Apr3g1890 846 Pfam PAN-like domain 356 414 IPR003609 -
Apr3g1890 846 SMART blect_4 36 152 IPR001480 -
Apr3g1890 846 CDD B_lectin 38 152 IPR001480 -
Apr3g1890 846 Pfam Protein tyrosine and serine/threonine kinase 534 799 IPR001245 GO:0004672|GO:0006468
Apr3g1890 846 Gene3D Phosphorylase Kinase; domain 1 494 606 - -
Apr3g1890 846 Gene3D - 24 149 IPR036426 -
Apr3g1890 846 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Apr3g1890 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Apr3g1890 846 SMART ntp_6 355 428 IPR003609 -
Apr3g1890 846 CDD STKc_IRAK 537 802 - -
Apr3g1890 846 SUPERFAMILY Protein kinase-like (PK-like) 516 821 IPR011009 -
Apr3g1890 846 Gene3D Transferase(Phosphotransferase) domain 1 607 809 - -
Apr3g1890 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 183 IPR036426 -
Apr3g1890 846 ProSiteProfiles PAN/Apple domain profile. 355 429 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1890 Apr-Chr3 34896939 34900698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1890 444 814 Receptor kinase-like Gene Family AT4G23230 54.570 8.51e-134 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr3g1890 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1890 - - cam:101504189 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1890 3 34896939 34900698 Apr3g1890 3 34896939 34900698 ECH
Apr3g1890 3 34896939 34900698 Apr1g1332 1 22260663 22264615 PCT
Apr1g1334 1 22276526 22279990 Apr3g1890 3 34896939 34900698 PCT