Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1887 ATGACGTCACACTCACTCTACCCACCCGAGTTAGACGCCGACTCCGTCGCCTCCTCCCCACGCTCCGAACACTACCACGACGCGCCGCCACGTGTCCGCTTCATGTGCAGCTTCGGCGGCAAGATCCTCCCTCGTCCCCACGACAACCAGCTCCGATACGTCGGTGGCGACACCCGAATCGTCGCCATCCACCGCTCTGTCTCCTTCTCTGCCCTCATTCTAAAGCTCTCTAAACTCTCAGGCATGAGCAACATAACGGCGAAGTACCAGCTACCTAACGAGGATCTTGACGCGTTGATCTCGGTGACGACGGACGAAGACGTGGAGAACATGATGGACGAGTACGACCGCGTGGCACAGAATCAGAACCCGCGGTCGGCTCGGCTTCGGCTCTTCCTCTTCCCAGAAGGCGAAGATTCTCGAGCCAGCAGCATCAGCTCGCTCCTAAACGGCTCAGCCAATCGCGAGAACTGGTTCCTCGACGCCTTAAACGGCGGCGTTTCGGGGCTCGAGCGAGGCCGTTCCGAAGCCTCTTCCATGGTTTCGGAAGTACCCGATTATCTCTTCGGTTTAGATAACTCCGAAGAATCACACCACCATCACCACCAGCGCGAACCGCGACCCAAGGACCGATTCGTTCTCCACGACAACGTTTCCAATTCGGATCCGGGTTCCCCTGCCCCGGTTGTCTCGTCCCCGTTTTGTTCCACGTCATCAGCGCCGTGCGTGCCCTCTATGCCCAACCTTCCCCCGGTTAAAACCAAACCTGAAACCCCGGTTCCCGATATGGACTCCAAGGAGAATAAAATCGAACCTGAAACGGGTGGGCAATCTCAACCCAACCCGTACGCGAGTAACCCTGTAGTGCACTATCCACCAGAAGCTGCTTATTCGGGTCATTCCATTCCGCCGGTGCCTGTTTTTTATGTTCCGGGTCCGGTTCAGCCGGGAACTGTACCAGTCCAACCGGTTCCTATGCAGGCACCTTATCCCTACGTTCAACAACCATTTCATGCAGTGGTACCATCTCAGGTTCCAATCGGGTACCATCATATGATTCCGGGTTCGGGTCAAGTATATGGTGCAAGGGTGAGGCATATGACCCCAATGCACCCATACAGTGCCTCTGCTGCAGTGGTTCACGACGGTTTGACACAGCAGGTGTACCAAGCTGTGCCAAACTCCGGTTCGGGTCCGGTACCGGTTCACCCGGTGATGGCAATGACGGGTGGGGATGAACCACAGAGAGGTGGAGCGGAGTATTTGACGGGTCGGGGCACCAACTCGTTAAATAATTGA 1299 0.5651 MTSHSLYPPELDADSVASSPRSEHYHDAPPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAIHRSVSFSALILKLSKLSGMSNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAQNQNPRSARLRLFLFPEGEDSRASSISSLLNGSANRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSEESHHHHHQREPRPKDRFVLHDNVSNSDPGSPAPVVSSPFCSTSSAPCVPSMPNLPPVKTKPETPVPDMDSKENKIEPETGGQSQPNPYASNPVVHYPPEAAYSGHSIPPVPVFYVPGPVQPGTVPVQPVPMQAPYPYVQQPFHAVVPSQVPIGYHHMIPGSGQVYGARVRHMTPMHPYSASAAVVHDGLTQQVYQAVPNSGSGPVPVHPVMAMTGGDEPQRGGAEYLTGRGTNSLNN* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1887 432 MobiDBLite consensus disorder prediction 1 25 - -
Apr3g1887 432 MobiDBLite consensus disorder prediction 192 216 - -
Apr3g1887 432 Gene3D - 52 135 - -
Apr3g1887 432 SUPERFAMILY CAD & PB1 domains 47 143 - -
Apr3g1887 432 CDD PB1_UP2 35 134 - -
Apr3g1887 432 PANTHER OS05G0427100 PROTEIN-RELATED 5 426 - -
Apr3g1887 432 MobiDBLite consensus disorder prediction 218 243 - -
Apr3g1887 432 MobiDBLite consensus disorder prediction 411 432 - -
Apr3g1887 432 MobiDBLite consensus disorder prediction 191 284 - -
Apr3g1887 432 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 426 - -
Apr3g1887 432 Pfam PB1 domain 47 135 IPR000270 GO:0005515
Apr3g1887 432 SMART PB1_new 46 136 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1887 Apr-Chr3 34877580 34879406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1887 26 171 MAP Kinase Kinase Kinase AT5G57610 43.919 1.80e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1887 - - aprc:113858359 848.195