Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1886 ATGGGAAAAAAATCAACGGCGGCGAAGGAGGGGGAGGAGGAGCCTCTGCCAGACCATCTCCGGTGTGGTCGCACCGACGGTCGGCAATGGCGGTGCCGGCGGCGAGTGATGGACAATCTGAAGCTGTGCGAGATTCACTACCTTCAAGGGCGCCATCGCCAGTTCAAGGAGAAGGTCCCTGAGTCTTTGAAGCTTCAGAGGAAGCGGAAGAAGGAGGAACCTTCGGTTCTCGACAATGTCGAATCTAGGGCACCAAGAGCGTCCAAAATGGTGAAGAAGAAACGCAAGCTTTCGGAGGGTTCAGAGTCATTGGTCGTTGCAACTTCTTCCGCTAGGAAGAAAGCGTTGAAGCAAGGTGATATGCAGTTGGAGCTTATAAGGATGGTTCTCAAGAGAGAAGCTGAGAAGAAGAAGAATAACAGCAACAACAAGAGTAAGAAGAAGAAGAAAAAGAAAAAGAAGAAAAAGGAAGAAGAGGAATTGCGTTACGGTGAAGGAGAGTTGAGGAGGGAATTGCCGAATGGTGTGATGGAAATCGCGCCAGCTTCAACGACTCATGATTACAACAATGTGGGTTCACATTGTGATGTGAAAGTGGGGGTTGATTGTAAAACAGTTACACCGCGTTACTTTAGGTCTAAGAATGTTGATAGAATCCCTGTTGGAAAGTTGCAGATTGTGCCGTATGGATCAAACTTGAAGAAGGGTAAGGCTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGATTCTTGGAATCTCATCAGGTGTTCGAGCTGTCAGAGAGAGTTTTTCTGCATGGATTGCATTAAAGAGCGATATTTTGACACTCAAAACGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCACATGTAAGGACTGCATGGCAAACCAATGTAAAGACGGGGCAAGTAAGGAATATTTGACTGGTAAAAGCAGAGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTAATAAAGCAAATAAGTGAAGATCAGGCTACTGAACTAGAAATAGAAGCAAAAATTAAAGGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTACTGTGATCACTGCAAAACGCCCATTTTGGATCTCCATAGAAGCTGTCCTAGCTGTTCATATAACCTATGCTTAAGTTGCTGTCATGAATTAAGTCATGGAAAAATGTCTGGTGAAATTGACTCATCTATGTTCAAGCAACCTGATAAATTGAAAGCTTGTGTTGCCGGTGAAAGCCATACTTTGGATGAGAAGGCGAAATTTGGTGGCAATTTTACTGCTTCTTCAATATTGCCTGAGAGGATAAATTGTAATGGCATTGATAGTGTATCATGCCCTCCTACAGAGGTTGGTGGTTGTGGTAATAGCCACCTCGATTTGAGATCTGTTTTCCTCTCTAGTTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCAGATAAAAGTTCGAGCTGCTCGTTGTGTTTTGACACCGATCACAATACTAACAGATACAAGCAGTTGCAAGACGCAGCTCGAAGAGAAGACTCCAATGACAATTACTTGTTTTGTCCCACAGTTTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGCAAAGGTCATCCAATAGTAGTCCAAGATGCGCTCCAAAATACATCAAACCTCAGTTGGGATCCACTAATCATGTTCTGTACTTATCTGGAGCAGAGCATTACTAGATATGAGAATAATAAAGACTTACTTGAGTCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAGGCAGTATTTTACTGGATCTGTTAAACGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTTAAACTAAAGGGGTGGCTGTCTTCCCAAATATTTAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCTTGTCTGGTCTTCTGAATTTGGCTGCAAATTTGCCACATGGGAGTGCAAAACATGAAATCGGGCCGTATGTCTATATTTCTTATGGCTCTGCTGACAAAGAAGCTGATTCTGTGACAAAACTCTGCTATGACTCATATGATGTGGTTAATATTATGACACATACAACGGATGTCCCACTCTCTACAGAACAGCTTACGAAAATAAGAAAATTGCTGAAAAAACACAGAACTCTATGTCAAATGGAGACTATTGCTACTGAGGAGCTACAGGAACAGAAATTGAATGGAATGGCATTATTGCATGCTGAAGAAATGGAGCAAAAAGGCCTACAGAGCATGGTTAAAGAAGGAATGGACTTTTTCAGGAGAGTCAATCGAACATCTTCCTTTTCAACTGAAGCTAAAAAAGTTGCTGGTCAGAGTATAGACAGCAAAATTTCCCAGGATGAAGAATGTGATTACTATTCTGATTCCGATTCCAATCCCTCTTTACTTCTCCCTGGGACTGTTCTAACTACTGAACTGTCTAAGAACAATAATCCTAGAAATCCCTTTGAAAGCTCACAGAGAGATAAAAAAAAGTTTACTGAGAATTCAGGTGCACAGTGGGATGTCTTTCGCAGACAAGATGTGCCTAAGCTCATAGAATACCTTAAAAGACACTCTGATGAATTCTCTTATACCCATGACTATAACAAGAAGATGGTTCATCCTATTCTGGATCAGAATGTTTTTCTTGACAGTACTCACAAAATGAGACTGAAGGAGGAATTTAAGATTGAACCATGGACTTTTCGGCAACATGTTGGACAAGCTGTCATCATTCCTGCTGGATGTCCGTACCAGATCAGGAATCCTAAGTGTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAACGTTACCGAGTCTATCCAGTTGATTGATGAGGTCCGACTATTGCCTGAAGACCATAAAGCAAAAGTAAACATGCTAGAGGTGAAGAAAATGGCGCTTAATAGCATGAATGCAGCAATTAAAGAAATACGTCAGCTTATGAGCAAAACATGA 3081 0.4154 MGKKSTAAKEGEEEPLPDHLRCGRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQFKEKVPESLKLQRKRKKEEPSVLDNVESRAPRASKMVKKKRKLSEGSESLVVATSSARKKALKQGDMQLELIRMVLKREAEKKKNNSNNKSKKKKKKKKKKKEEEELRYGEGELRRELPNGVMEIAPASTTHDYNNVGSHCDVKVGVDCKTVTPRYFRSKNVDRIPVGKLQIVPYGSNLKKGKAKRKKCHWCQRSDSWNLIRCSSCQREFFCMDCIKERYFDTQNEVKKACPVCRGTCTCKDCMANQCKDGASKEYLTGKSRVDRILHFHYLICMLLPVIKQISEDQATELEIEAKIKGKNISDIQIKQVEFGCNEKNYCDHCKTPILDLHRSCPSCSYNLCLSCCHELSHGKMSGEIDSSMFKQPDKLKACVAGESHTLDEKAKFGGNFTASSILPERINCNGIDSVSCPPTEVGGCGNSHLDLRSVFLSSWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQDAARREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPIVVQDALQNTSNLSWDPLIMFCTYLEQSITRYENNKDLLESCLDWCEVEINIRQYFTGSVKRRPQRNTWHEMLKLKGWLSSQIFKEQFPAHFAEVIDALPVQEYMNPLSGLLNLAANLPHGSAKHEIGPYVYISYGSADKEADSVTKLCYDSYDVVNIMTHTTDVPLSTEQLTKIRKLLKKHRTLCQMETIATEELQEQKLNGMALLHAEEMEQKGLQSMVKEGMDFFRRVNRTSSFSTEAKKVAGQSIDSKISQDEECDYYSDSDSNPSLLLPGTVLTTELSKNNNPRNPFESSQRDKKKFTENSGAQWDVFRRQDVPKLIEYLKRHSDEFSYTHDYNKKMVHPILDQNVFLDSTHKMRLKEEFKIEPWTFRQHVGQAVIIPAGCPYQIRNPKCCVHAVLEFVSPENVTESIQLIDEVRLLPEDHKAKVNMLEVKKMALNSMNAAIKEIRQLMSKT* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1886 1026 MobiDBLite consensus disorder prediction 132 165 - -
Apr3g1886 1026 MobiDBLite consensus disorder prediction 141 155 - -
Apr3g1886 1026 Pfam JmjC domain, hydroxylase 875 967 IPR003347 -
Apr3g1886 1026 ProSiteProfiles Zinc finger RING-type profile. 243 289 IPR001841 -
Apr3g1886 1026 ProSiteProfiles WRC domain profile. 16 62 IPR014977 -
Apr3g1886 1026 PANTHER PROTEIN B160 12 1024 - -
Apr3g1886 1026 MobiDBLite consensus disorder prediction 851 872 - -
Apr3g1886 1026 ProSiteProfiles JmjC domain profile. 676 989 IPR003347 -
Apr3g1886 1026 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 1024 IPR045109 GO:0032454|GO:0033169
Apr3g1886 1026 MobiDBLite consensus disorder prediction 61 79 - -
Apr3g1886 1026 MobiDBLite consensus disorder prediction 61 113 - -
Apr3g1886 1026 Pfam WRC 17 58 IPR014977 -
Apr3g1886 1026 SUPERFAMILY Clavaminate synthase-like 556 1012 - -
Apr3g1886 1026 MobiDBLite consensus disorder prediction 1 27 - -
Apr3g1886 1026 Gene3D Cupin 548 998 - -
Apr3g1886 1026 Coils Coil 131 162 - -
Apr3g1886 1026 SMART cupin_9 657 989 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1886 Apr-Chr3 34857700 34863884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1886 17 110 GRF Transcription Factor Family AT4G37740 33.663 9.78e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr3g1886 JmjC 7.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1886 K15601 - gmx:100810673 1663.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1886 3 34857700 34863884 Apr3g1886 3 34857700 34863884 ECH
Apr3g1886 3 34857700 34863884 Apr1g1346 1 22389904 22395461 PCT