Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1881 ATGGGTGACGGAGAGTTCGCCGGAGAATCCCAAACCTCGGGGTCACCCGCCGGAGTTTCCGCTCTCCGGCGAGCGGTGGAGCTCATCTGTGCCGTGCTCTCTCTCTCGCACTCGATCAGGGTCTTCGCCGGAAAGTGGCAACTCATTCGGAACAAGCTGGAAGAGCTTCACGCGGGTCTAATCGCCGGCGAGAACTGCGATTCCGGCGAGAACACATCACTTTCCCGGTTGGTTCCTTCTATAGTGGCTACCGCAACGGAGTGTCACGATCTGGGTCGGCGCTGCGTCGATGTGTCTTACAGTGGGAAGCTTCTGATGCAGAGCGATTTGGATGTGGCGTTCGCGAAGCTCGATGGGCATGCGAAGAAGCTCTCAGAGTTATACAAGACGGGTATTTTGACAAACGGGTATGCTTTGGTTGTGTCAAAACCGAGTCTTGGAGCTTCCAGAGAGGACATGAGGTTCTACGTGAGGGACTTGTTGACGAGGATGAAGATTGGGGATTTGGGTATGAAGAGACAGGCCTTGAGGAACCTTCTGGATGTTGTGTTGGAGGACGAGAAGTACGTGAAGGTGATTGTTGACGTGGGTGATGTTGTTCATTTGTTGGTTGGTTTTTTGGGTTCTGCTGAGGTGGAGATTCAAGAAGAGAGTGCTAAAGTGGTTTCTGTTGTGGCGGGGTTTGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCTCCGTTGGTTAAGGTTTTGGATTGTGGGAGTGAGTTGGGGAAGGTTGCGGCTGCAAGGTGTTTGGTGAAGTTGACTGAGAATTCGGACAATGCTTGGAGTGTTTCGGCTCATGGGGGTGTCACTGTGCTGTTGAAGATTTGTGGTGGTGTGGATTGTGTAGCTGATTTGGTTGGGCCTGCTTGTGGGGTGTTAAGGAATCTTGTTGGTGTTGAGGAAATTAAGAGGTTTATGGTTGAGGAGGGTGCTGTGTCCATTTTTATCAAGCTTGTGAGGTCCAAGGAAGAAGCAATTCAGGTCAATTCGATAGGGTTCCTTCAGAGTATTGCCTCTGGAGATGAGTTGGTCAGGCAGATGGTGGTTCGAGAAGGAGGAATCCGAGCTTTGTTACGTGTTTTGGATCCTAAGTGGTCTTATTCTTCTAAAACAAGGGAGATAGCAATGAGGGCTGTTGAGAATTTGTGTTTTTCATCCTCTAGTTCCGTGAGTGTTTTGATGAGTTATGGCTTTGTGGATCAGTTGCTATATTATGTTCGAAATGGGGAGGTTTCAATCCAAGAGTTGGCTCTCAAAGTGGCGTTTAGATTGTGCGGAACATCAGAGGAGGCTAAGAAAGCGATGGGTGATGCGGGTTTTATGCCAGAGTTTGTTAAGTTTCTTAATGCAAAATCATTTGAAGTTCGTGAAATGGCAGCTGAGGCACTCTCCGGCATGGTTATGTTGCCTAGGAATAGAAAGAGATTTGTGCAGGACGACCATAATATAGCCCTTCTTCTGCAATTACTTGATCCGGAGGAGGGGAATTCAGGTAATAAAAAGTTCTTGATCTCTATCTTAATGTCATTAACAAGTTGCAACAGTGGGAGGAAAAAGATTGTTAGTTCTGGATATGCCAAAAACATAGAAAAACTTGCAGAGGCTGAAGTTTCTCCTGATGCCAAGAAACTTGTCAAGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCATGA 1731 0.4766 MGDGEFAGESQTSGSPAGVSALRRAVELICAVLSLSHSIRVFAGKWQLIRNKLEELHAGLIAGENCDSGENTSLSRLVPSIVATATECHDLGRRCVDVSYSGKLLMQSDLDVAFAKLDGHAKKLSELYKTGILTNGYALVVSKPSLGASREDMRFYVRDLLTRMKIGDLGMKRQALRNLLDVVLEDEKYVKVIVDVGDVVHLLVGFLGSAEVEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVKVLDCGSELGKVAAARCLVKLTENSDNAWSVSAHGGVTVLLKICGGVDCVADLVGPACGVLRNLVGVEEIKRFMVEEGAVSIFIKLVRSKEEAIQVNSIGFLQSIASGDELVRQMVVREGGIRALLRVLDPKWSYSSKTREIAMRAVENLCFSSSSSVSVLMSYGFVDQLLYYVRNGEVSIQELALKVAFRLCGTSEEAKKAMGDAGFMPEFVKFLNAKSFEVREMAAEALSGMVMLPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLAEAEVSPDAKKLVKKLSTNRFRSMLSGIWHS* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1881 576 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 576 - -
Apr3g1881 576 SUPERFAMILY ARM repeat 158 559 IPR016024 -
Apr3g1881 576 SMART arm_5 269 311 IPR000225 GO:0005515
Apr3g1881 576 SMART arm_5 441 481 IPR000225 GO:0005515
Apr3g1881 576 SMART arm_5 354 397 IPR000225 GO:0005515
Apr3g1881 576 SMART arm_5 186 227 IPR000225 GO:0005515
Apr3g1881 576 SMART arm_5 228 268 IPR000225 GO:0005515
Apr3g1881 576 SMART arm_5 312 352 IPR000225 GO:0005515
Apr3g1881 576 Pfam Armadillo/beta-catenin-like repeat 442 477 IPR000225 GO:0005515
Apr3g1881 576 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 280 324 IPR000225 GO:0005515
Apr3g1881 576 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 576 - -
Apr3g1881 576 Gene3D - 156 565 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1881 Apr-Chr3 34779785 34782523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1881 157 371 U-box Gene Family AT5G67340 26.941 3.84e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1881 - - gmx:100809382 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1881 3 34779785 34782523 Apr1g1351 1 22461239 22463353 PCT