Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1847 ATGGAAACAGAGTCGACGGTGGTGACGTGGGGCACCTGGGAGGAGCTCCTCCTTGGCGGAGCTGTTCTCAGGCATGGGACCCAAGATTGGACTGTCGTCGCTGCGGAGCTCCGAACCCGAACCGTTTCTCCATGCACTTTCACACCTGAGGTCTGTAAAGCCAAATATGAAGACTTACAACAGCGCTATTCTGGGTGCTCGGCTTGGTTTGAGGAGCTTAAGAAGAAAAGAGTAGCAGAGCTTAAGAGAGCTTTGGAACTATCTGAGGATTTAATTGGGACCCTTGAATCAAAGCTTGAATCCCTCAAGGCTGGGAAGAATGAGAAAAGAGATGGTTTTCATGTTGACACTGGCTCAGTTGAACCAGAATTACATGTTCCTTTGCTAAAATTGGACAGAATTGAATCTTCTCCTAAAGAGATGTCAAAGGATGGGCTATCTGCTGGGAGTTTCACACATGAAACTCAGGCAAACTGGTCTCATGAATGCCAGGTTCCACCAATGTCTTGTGAAGATATAGAGACCAAGCCTGAAGTTTCAGGATTCACTGAACATGAGAAAGTTTTGAATGTAGAAAAGTTGGCAAACACTGTATGTGAAGGACAGGGAGTGGGTTTGAAGAAACGGAGGGGGAAGAGAAAGAGGAAGGATTGTGGAAGACATACTAATGAAATAAGTGCAAGAGAAAGTGATTTTTCAGCCGATGTGTGCAAAGAAAGTTCTATTAGTAACTGTGCTGAGGTTGTCAAATCTTATGGTATAAATGAGGAGAATACGAACGTGAAAAAGGTTGGAATAAAATATCTGATGGAGATTTTAGATTCTGTTTTGGTAGTTAAAGGTGCTTCTGCCTTTTGTCGCAGGCTTGATAGCCAGAAACGAGGAAGGTACAAGAAAATGATACGGCGGCATGTAGATTTTGACACTATAAGATCAAGCATCAGCAACCAAACAATCAAGTCAGCTATGGAACTTTTCAGAGACTTGCTGTTACTGACCAACAATGCTCTAGTATTCTACTCCAAAACCACTCGTGAATATAAAACTGCTCTACTACTTAGAGACCTTGTCACCAAAACATTGAGAGAGAAACTCAAGTGTTTTACCAGCAGGGTAACCCTTCCTTCTAGGATTTTACCTGTTGATGATCCTTCAGTGAAAGTCAGAAGTGTACGCCCTGGTAATCGTAAGATTGTTGCAAAGGTGGTTGGTGGTAGCAACTCTGCTTCTGGGGTCTCACTTGTTGCCAAGAAAACAAACAAAGTGGATTCTCCTCCTTCAGTGGAATCCTTACCCATCAAGAAAGCTTTTGGTAGACCAAAAAAGATTGAACGTGAAAGTGGAGTTCAAAGATGTGCAACTCCAAGGAAGGAAAAGAAAAGAGGAAGAGCAAAGTGA 1398 0.4306 METESTVVTWGTWEELLLGGAVLRHGTQDWTVVAAELRTRTVSPCTFTPEVCKAKYEDLQQRYSGCSAWFEELKKKRVAELKRALELSEDLIGTLESKLESLKAGKNEKRDGFHVDTGSVEPELHVPLLKLDRIESSPKEMSKDGLSAGSFTHETQANWSHECQVPPMSCEDIETKPEVSGFTEHEKVLNVEKLANTVCEGQGVGLKKRRGKRKRKDCGRHTNEISARESDFSADVCKESSISNCAEVVKSYGINEENTNVKKVGIKYLMEILDSVLVVKGASAFCRRLDSQKRGRYKKMIRRHVDFDTIRSSISNQTIKSAMELFRDLLLLTNNALVFYSKTTREYKTALLLRDLVTKTLREKLKCFTSRVTLPSRILPVDDPSVKVRSVRPGNRKIVAKVVGGSNSASGVSLVAKKTNKVDSPPSVESLPIKKAFGRPKKIERESGVQRCATPRKEKKRGRAK* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1847 465 MobiDBLite consensus disorder prediction 440 455 - -
Apr3g1847 465 CDD Bromodomain 266 361 - -
Apr3g1847 465 Gene3D - 258 372 IPR036427 GO:0005515
Apr3g1847 465 Coils Coil 78 98 - -
Apr3g1847 465 PANTHER BROMODOMAIN PROTEIN 4 465 - -
Apr3g1847 465 SMART bromo_6 262 366 IPR001487 GO:0005515
Apr3g1847 465 Pfam Bromodomain 271 350 IPR001487 GO:0005515
Apr3g1847 465 MobiDBLite consensus disorder prediction 440 465 - -
Apr3g1847 465 SUPERFAMILY Bromodomain 262 368 IPR036427 GO:0005515
Apr3g1847 465 ProSiteProfiles Bromodomain profile. 285 347 IPR001487 GO:0005515
Apr3g1847 465 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 4 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1847 Apr-Chr3 34381408 34385871 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr3g1847 Bromodomain 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1847 - - pvu:PHAVU_002G224000g 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1847 3 34381408 34385871 Apr1g1373 1 22696699 22702640 PCT