Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1841 ATGGCGGTTGATGACGTGGACTTCTCGGAACTGTTTTCTGCTGGTGATGACGATGGTGATGACATGCTTTATATCGATATTCAGACCGTTATGAAGGTGCTTGACGAAGACAAGTGTGACCTTCGGGAGAATAGTCCTGAGGATTCTTCATCAAAAAATGTTTCACCTAGTGAATTTGACATCCATGATACTTTTCAGATGCAAAATGGGGCTCAAGTATTGGAAGAACCTCATTTTTCAAGATTGGACTTTGTGGATTCAGTCACGAGCTGTTCTACATTCTGCTCAGATGTGTCAGATTCTGGGGCCAGAGGTTCAGTTGTTTTTTCTGATTATGTAGCAAATTCTATGCTTGACTGTGAACCTGAAAACCAGGGACCTCATTCTCAGGCTTGCTCTTCCCCAAATGCTCTTCCTGGTAATTTTAGTGAGTCATTCTCTCCGGGTGAAAGTGATGAGATTTGCTATGCAGACAGAACAGGAGTTTCTAAACTTGAGATGCTTGCTTATAGCGTGGAAACAAGTTTCCCTGAGGCATACTCAAACAATGGATCTATTTGTGAAGATAGCTTGAATATGAGTATGTCAAAGGGTGAAAATGACAGTCAATCCAAGCATGTGGGAGAGGATGTTGACTCTGAATATGCTTCGGCTTCACTCAGTTCTATTGTTGAGAATGATGTAAATATTGAAGGTTATGCTGAAGACATCATTGGAGGAGTTTCTGGGCAACAGGAAAATGACTCGTGTACATCTTTTGAAGCATCATTCATGGATGCTGATAGATCTTTGCGTGTTGCAACTTCAACTGATTCTACTATTGGTCAAGGTTCCCATTTTTCCAGGGATTTTATTGACTACCATCTATCTGCAAATTGTTATCCGGGAACAAATGATAGACCCATTGCTACTGATTCTTCTCTTGGTCTTTTGCCTAATGGTATTTGTTCTCAATTGTGGACAAATGTAGCATGTATGAGTAATGGCATGCCATCAAGCTCTTCTGGGGGGATATCTTTTCAAGATAGTCAAATTATGTTAGCTAATAGTGGTTATCCATCATCTTTTTCTGGTAAAGTTATTTTTGATGACATGTCATCATTGCCGCTTTCAGCTTGTGCTTCACACATGTCATATGGAGACCTTTACCCAAACAATTTTCACAGCAATGATGCTGAGTTCAATGTAGCCCAAGAGGTGAAACAAACACCTGATCTTTTTTCTCCTAGAGGGTGTCAGACTTATGAATATTTCAAGAATGAGGATAGTTGTGCACTGAGAACATCTGACACATCCGATAATTATCAATATATCATTGATGGGACTGCTAGTTTTCAAGGAAACATGGGCAATTCAAATTTAAAAGATGCAGATAGACCTTGGCCCCATAACCAAGCACTAATTGCCAGTGAGAAACAGTTTGGTTGTGTTGAGAGGGGAGGAGGAAAAATGATTCAACATAAACTTATTGATTCTCAACTTTCAAAAGGAAGAACTGAGAACTTCCATGTTCAGAAATACCCTGATGTTTGCGTTATTGAAGACATCAGTCATCCTGTGCTGTCGAGTCAATCTGCAGACATTGGGAATTCACTTAATATATCTCGATCTTACAGATATGTTGATTCCCAACCTTACATGGTTGAAAGCACAAGACTGAAAGCATGTGATGAGCGTAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGCCCTCCAAATGGATTTTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTAGCATGGATGGTTCAAAAGGAAACATCAAGTCTCTATTGCTCGGGAGGAATTCTTGCAGATGATCAGGGGCTTGGAAAAACAGTATCAACTATTGCATTAATATTGAAGGAAAGACCTTCAATATTCAAGGAGTGCATCAATGCCCCCAAAGGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGATGAGATTCCTCAGATTGGTAAAGTAATGGACGGATCTAATGTGTGTCAGGATAAGTCAAGTATGAATGCAATCAAAAGCACGGATTTGTTGATGCAAGCAAAGGGAAGGCCATCTGCTGGAACCCTTATTGTTTGTCCCACTAGTGTCCTGCGCCAATGGGCTGAGGAGTTGAATAATAAGGTAACTAGCCAGGCAAACCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCATACAAGGTGGCTAAGTATGATGTTGTTCTAACAACTTATTCTATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGATGAAAGGGGGAATTATGAAGATCATGCTGGAACAAGTAGGAAAAGAAAAAACCCTTCTAATTCTAGTAAAATTAGCAAGAAGAAGTTGGATGGAACAATTGTTGAGGCTGTTACTCGGCCTCTTGCAAAAGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAGACTCAAGTTGCAAGGGCTTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCCATCCAGAATGCAATTGATGATCTTTACAGTTACTTCAGATTCCTAAGATATGACCCTTATGCTGTCTATACATCATTCTGTTCTACAATTAAGATCCCAATTAGCAGAAATCCATCAAAAGGATATAAAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGCCGGACCAAAGGCTCACTGCTTGATGGGGAACCTATTATTTCCTTGCCGCCAAAATTTATAGAGCTGAAGAAAGTTGATTTTTCAAGGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCGCGTGCACAATTTCAGGAATATGCAGATGCTGGAACTGTCAAACAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGCGATCACCCTCTGCTTGTCAAGCGTTACAATTCTAATTCTCTATGGAAATCTTCAGTGGAAATGGCAAAGAAGCTTCCTCAGGAAAAGCAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCTCTCTGTGGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAATCAGTGCATTTGTGAACATCTTACTGGTGATGACGATGACAATCAGTGCCCTGCTACAAATTGCAGAAGTCGACTGTGCAAATCCTCAGTGTTTTCAAAAGCCACACTGAACAGTTGTCTTTCTGACCAGGGCTGTAATAATTCATCTGGTTGCTCTGATTCTGAAGTGGAGGAATTTGAGCCTTGGTCTCAGAGTCAGCCATATGATTCTTCAAAAATAAAGGCTTCACTTGAGGTTTTGAAGTCATTGTGTAAGCCACATTGCTATACATTGAAAAGTATTTCTGTGCATAGCACTTTCAGGGAAAATAATGACTGCCCTGGGAATCCATCTGATGCTAACAATGGGAAATTCTTCAAAGATTCTCCTGATGAGAGTCAAAATTTGTCTGGGAATGGAGGCTCTAATAAGTCAGTTTCTGTTGTAGGGGAGAAAGCAATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGTATGTCTTAAGAATTCTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCTAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCTGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGACTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGCCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACTGTTGAGGATCGTATTCTAGCTCTGCAGCAAAAAAAGCGAATGATGGTTGAGTCTGCATTTGGGGAGGATGGAACTGGTGGGCGTCAGAGTCGCCTCACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 4035 0.4072 MAVDDVDFSELFSAGDDDGDDMLYIDIQTVMKVLDEDKCDLRENSPEDSSSKNVSPSEFDIHDTFQMQNGAQVLEEPHFSRLDFVDSVTSCSTFCSDVSDSGARGSVVFSDYVANSMLDCEPENQGPHSQACSSPNALPGNFSESFSPGESDEICYADRTGVSKLEMLAYSVETSFPEAYSNNGSICEDSLNMSMSKGENDSQSKHVGEDVDSEYASASLSSIVENDVNIEGYAEDIIGGVSGQQENDSCTSFEASFMDADRSLRVATSTDSTIGQGSHFSRDFIDYHLSANCYPGTNDRPIATDSSLGLLPNGICSQLWTNVACMSNGMPSSSSGGISFQDSQIMLANSGYPSSFSGKVIFDDMSSLPLSACASHMSYGDLYPNNFHSNDAEFNVAQEVKQTPDLFSPRGCQTYEYFKNEDSCALRTSDTSDNYQYIIDGTASFQGNMGNSNLKDADRPWPHNQALIASEKQFGCVERGGGKMIQHKLIDSQLSKGRTENFHVQKYPDVCVIEDISHPVLSSQSADIGNSLNISRSYRYVDSQPYMVESTRLKACDERNILRVALQDLSQPKSEVSPPNGFLAVPLLRHQRIALAWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPSIFKECINAPKGELETLNLDVDDDEIPQIGKVMDGSNVCQDKSSMNAIKSTDLLMQAKGRPSAGTLIVCPTSVLRQWAEELNNKVTSQANLSVLVYHGSNRTKDPYKVAKYDVVLTTYSIVSMEVPKQPLVDKDDDERGNYEDHAGTSRKRKNPSNSSKISKKKLDGTIVEAVTRPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYKKLQAVLKTIMLRRTKGSLLDGEPIISLPPKFIELKKVDFSREERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKQISLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDDDNQCPATNCRSRLCKSSVFSKATLNSCLSDQGCNNSSGCSDSEVEEFEPWSQSQPYDSSKIKASLEVLKSLCKPHCYTLKSISVHSTFRENNDCPGNPSDANNGKFFKDSPDESQNLSGNGGSNKSVSVVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRMMVESAFGEDGTGGRQSRLTVDDLKYLFMM* 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1841 1344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 871 IPR014001 -
Apr3g1841 1344 MobiDBLite consensus disorder prediction 1166 1182 - -
Apr3g1841 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 917 1343 IPR027417 -
Apr3g1841 1344 ProSitePatterns Zinc finger RING-type signature. 1040 1049 IPR017907 -
Apr3g1841 1344 Gene3D - 777 910 IPR038718 -
Apr3g1841 1344 Gene3D - 677 769 IPR038718 -
Apr3g1841 1344 SMART ring_2 1025 1065 IPR001841 -
Apr3g1841 1344 Gene3D - 924 1343 IPR027417 -
Apr3g1841 1344 CDD DEXDc_SHPRH-like 587 909 - -
Apr3g1841 1344 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 514 1343 - -
Apr3g1841 1344 MobiDBLite consensus disorder prediction 763 784 - -
Apr3g1841 1344 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 514 1343 - -
Apr3g1841 1344 CDD SF2_C_SNF 1189 1296 - -
Apr3g1841 1344 Gene3D - 556 649 IPR038718 -
Apr3g1841 1344 MobiDBLite consensus disorder prediction 1153 1182 - -
Apr3g1841 1344 SUPERFAMILY RING/U-box 1022 1069 - -
Apr3g1841 1344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1180 1339 IPR001650 -
Apr3g1841 1344 Pfam SNF2-related domain 596 986 IPR000330 GO:0005524|GO:0140658
Apr3g1841 1344 MobiDBLite consensus disorder prediction 763 795 - -
Apr3g1841 1344 SMART helicmild6 1203 1286 IPR001650 -
Apr3g1841 1344 SMART ultradead3 583 886 IPR014001 -
Apr3g1841 1344 ProSiteProfiles Zinc finger RING-type profile. 1025 1066 IPR001841 -
Apr3g1841 1344 Pfam Helicase conserved C-terminal domain 1187 1286 IPR001650 -
Apr3g1841 1344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1018 1078 IPR013083 -
Apr3g1841 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 909 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1841 Apr-Chr3 34305367 34314246 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1841 477 1343 RAD5 or RAD16-like Gene Family AT1G61140 58.628 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr3g1841 SNF2_N 6.5e-69 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1841 3 34305367 34314246 Apr3g1841 3 34305367 34314246 ECH