Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1840 ATGGCGGATGATGACGTGGACTTTTCGGAACCGTTTCCTGCTGGAGATGATGACGGTGATGACATGCTTTATATTGATATTCAAACCGTTATGAAGGTGCTCGATGAAGACGAGTGTGACCTTCGGGAGAATAGTCCTGAGGATTCTTCATCAAAAAATGTTTCACCTAGTGAATTTGGCTTTCATGATACTTTTCAGATACAAAATGGGTCTCAAGTGTTAGAAGAACCTCATTTTTCAAGGTTGGACTTCGTTGATTCAGTCACAAGCTGTTCTCCATTCTGCTCAGATGTGTCAGATTCTGGTGCCAAAGGTTCAGTTGGCTTTTCTGATTCTGCAGCAAATTCTATGCTCGACCGTGAACCTGAAAACCAGGGGCCCCATTCTCAGGCTTGCTCTTCACCAAATGCTTTTCCTGATGGTTCAGCTTCACTCAGTTCTATTGTTGAGAATGGTGATCTAAATATTGAAGGTTATGTTGACGACATTATTGGAGGAGTTTCTGGGCAACAGGAAAATGAATCATGTACATCTTTTGAAGTATCTTTCATAGATGCTGATAGATCTTTGCATGTTGCAACTTCAGCTGATTCTAATATTGGTCAAGGTTCCCATGTTTCCAGTGATTTTATTGACTATCATCTATCTTCAAATTGTTACCAGGGAACAGACAACAGACCCTCTGTTGCTGACGCTTCTCTCAGTTTTTTGCCTAATGGTATTTATTCTCAATTGTGGACAAATGAAGAAACAATGAATAACATGAAGGCTGAAAATGTTGAGTTAAATACTGACATTGCATGCATGAGTAATGGCATGCCCTCAAGCTCTATTGGGGAAATATCTTTTCAAGATAGTCAAATTATGTTAGCTGATAGTGGTTATCCATCATCTTTTTCTACTAAAGTTTTTTTTGATGACATGTCACCACTGCCGCTTTCAGCTTGTGCTTCTTACATGTCATACAGAGATCATTACCAAAACAATTTTCACAACAATGATGCTGAGTTCAATTTAGTTCAAGAGATGAAACAAACACCTGATATTTTTTCTCCTACAGGGTGTCAGACCTATGAATGCTTTAAGAATGAGGATAATTGTGCAGTTAGAACATCAGACATGTCCAATCATTATCAATATATCATTGATGGGACTGCTAGTTTTCAAGGAAACATGGGCAATTCAAATTTAAAAGATGAAGATAAACCTTGCCCTAATGCTCAAGCACTTATTGCCAGTGAAAAGCAGTTTGGTTGTGTTAAGAGAGAAGGAGGAGGCAAAATGATTCAACATAAACATATTGATTCTCATCTTTCAAGAGGTAGAGCTGACAATTTCCAAGTTGAGACCGACCCTGATGTTTGCATTATTGAAGACATTAGTCATCCTGTGCCAACAAGTCAATCTGCAGACATTGGAAATCCCCTTAATATATCACAATCTTATAGATATGTTGATTCCCAACCTTACATGGTTGGAAGCTCAAGGCTGAAGACATGTGATGAGCGAAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGCCCACCAGAGGGATTGTTGGCAGTTCCTCTTTTACGACACCAGAGAATTGCTTTAGCATGGATGGTTCAAAAGGAAACATCAAGTTTATATTGCTCTGGAGGAATTCTAGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCAATATTCAATGAGTGCGTCAATGCCCCAAAAGGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGATGAGGTTCCTCAGAATGGTAAAGTAAAGGATGGATCTAATATGTGTCAGGATAAGTCAAGTATGAATGCAATCAAAAGCATGGATTTGTTTATGCAAGCAAAGGGAAGGCCATCTGCTGGAACCCTTATTGTTTGTCCCACTAGTGTCTTGCGCCAATGGGCTGAGGAGTTGAATAATAAGGTAACTAGCCAGGCAAACCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACAAAAGATCCATACGAGGTGGCTAAGTATGATGTTGTTCTAACAACCTATTCTATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGATAAGGATGATGAAGAAAGGGGAATTTTTGAAGATCATGCTGGACCAAATAGGAAAAGAAAAAGCCCTTCTAATTCTAGTAAAAGTAGCAAGAAGAAATCAGATGGCACAATTCTTGAGGCTGTTGCTCGACCTCTAGCAAAGGTGGCATGGTTTAGGGTTGTCCTAGATGAGGCCCAGAGTATAAAGAATCACAAAACACAAGTTGCAAGGGCTTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCCATCCAGAATGCAATTGATGATCTTTACAGTTACTTCAGATTCCTTAGATATGACCCTTATGCTGTCTATACATCATTTTGTTCTACAATTAAGATCCCAATTAACAGAAATCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGTCGGACCAAAGGCACACTGCTAGATGGAGAACCTATTATTTCCTTGCCGCCAAAATTTATAGAGCTGAAAAAAGTTGATTTTTCAAGGGAGGAACGTGATTTCTATTCCAGACTGGAGGCTGATTCACGGGCACAGTTTCAGGAATATGCTGATGCCGGAACTGTCAAGCAAAATTATGTCAACATTTTACTGATGCTTCTGCGCCTTAGACAAGCTTGCGATCACCCTCTGCTTGTCAAGCGTTACAATTCTAATTCTCTATGGAAATCTTCAGTGGAAATGGCAAAGAAGCTTCCTCAGGAAAAGCAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCGCTCTGTGGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAATCAGTGCATTTGTGAACATCTTACTGGTGATGATGATGACAATCAGTGCCCTGCTACAAATTGCAGAAGTCGACTGCGCAAATCCTCGGTGTTTTCAAAAACCACACTGAACAGTTGTCTTTCTGACCAGGGCTGTGATAATTCATCGGGTTGCTCTGGTTCTGAAGTGGAGGAATTTGAGCCTTGGTCTCAGAGTCAGCCATATGATTCTTCAAAAATAAAGGCTTCACTTGAGGTTTTGAAGTCATTGCGCAAGCCACAGTGCTATACATCAAAAAGTATTTCTATGCAAAGCACTTTCAGGGAAAATAATGACTGCCCTGGTAACCCATCTGATGCTAAAAATGGGAAATTCTTTGAAGATTCTCCTGAGAGTCAAAATTTGTCTGGGAATGGAGGCTCTAATGATTCAATGACTGTTGTAGGGGAGAAAGCAATAGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGTATGTCTTAAAAATTCTTCAATTCAGTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCTAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCTGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGACTTATGGTGGAACCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGCCCTGTGACTGTTTTGCGGTTAACTGTTAGAGATACTGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAAAAGCGAATGATGGTTGCCTCTGCATTTGGGGAGGATGGAACTGGTGGTCGTCAGAGTCGCCTCACTGTGGATGATTTAAAATACTTGTTCATGATGTGA 3864 0.403 MADDDVDFSEPFPAGDDDGDDMLYIDIQTVMKVLDEDECDLRENSPEDSSSKNVSPSEFGFHDTFQIQNGSQVLEEPHFSRLDFVDSVTSCSPFCSDVSDSGAKGSVGFSDSAANSMLDREPENQGPHSQACSSPNAFPDGSASLSSIVENGDLNIEGYVDDIIGGVSGQQENESCTSFEVSFIDADRSLHVATSADSNIGQGSHVSSDFIDYHLSSNCYQGTDNRPSVADASLSFLPNGIYSQLWTNEETMNNMKAENVELNTDIACMSNGMPSSSIGEISFQDSQIMLADSGYPSSFSTKVFFDDMSPLPLSACASYMSYRDHYQNNFHNNDAEFNLVQEMKQTPDIFSPTGCQTYECFKNEDNCAVRTSDMSNHYQYIIDGTASFQGNMGNSNLKDEDKPCPNAQALIASEKQFGCVKREGGGKMIQHKHIDSHLSRGRADNFQVETDPDVCIIEDISHPVPTSQSADIGNPLNISQSYRYVDSQPYMVGSSRLKTCDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALAWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPIFNECVNAPKGELETLNLDVDDDEVPQNGKVKDGSNMCQDKSSMNAIKSMDLFMQAKGRPSAGTLIVCPTSVLRQWAEELNNKVTSQANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLVDKDDEERGIFEDHAGPNRKRKSPSNSSKSSKKKSDGTILEAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFIELKKVDFSREERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKQISLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDDDNQCPATNCRSRLRKSSVFSKTTLNSCLSDQGCDNSSGCSGSEVEEFEPWSQSQPYDSSKIKASLEVLKSLRKPQCYTSKSISMQSTFRENNDCPGNPSDAKNGKFFEDSPESQNLSGNGGSNDSMTVVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRMMVASAFGEDGTGGRQSRLTVDDLKYLFMM* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1840 1287 MobiDBLite consensus disorder prediction 37 61 - -
Apr3g1840 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 962 1022 IPR013083 -
Apr3g1840 1287 SMART helicmild6 1146 1229 IPR001650 -
Apr3g1840 1287 MobiDBLite consensus disorder prediction 709 745 - -
Apr3g1840 1287 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 437 1286 - -
Apr3g1840 1287 SUPERFAMILY RING/U-box 966 1021 - -
Apr3g1840 1287 Pfam SNF2-related domain 540 930 IPR000330 GO:0005524|GO:0140658
Apr3g1840 1287 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 437 1286 - -
Apr3g1840 1287 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g1840 1287 Gene3D - 739 854 IPR038718 -
Apr3g1840 1287 Gene3D - 621 738 IPR038718 -
Apr3g1840 1287 Pfam Zinc finger, C3HC4 type (RING finger) 969 1007 IPR018957 GO:0046872
Apr3g1840 1287 CDD SF2_C_SNF 1132 1239 - -
Apr3g1840 1287 MobiDBLite consensus disorder prediction 1110 1126 - -
Apr3g1840 1287 Gene3D - 868 1286 IPR027417 -
Apr3g1840 1287 SMART ultradead3 527 830 IPR014001 -
Apr3g1840 1287 ProSitePatterns Zinc finger RING-type signature. 984 993 IPR017907 -
Apr3g1840 1287 Pfam Helicase conserved C-terminal domain 1129 1229 IPR001650 -
Apr3g1840 1287 MobiDBLite consensus disorder prediction 709 728 - -
Apr3g1840 1287 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1123 1282 IPR001650 -
Apr3g1840 1287 CDD DEXDc_SHPRH-like 531 853 - -
Apr3g1840 1287 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 546 815 IPR014001 -
Apr3g1840 1287 Gene3D - 500 590 IPR038718 -
Apr3g1840 1287 ProSiteProfiles Zinc finger RING-type profile. 969 1010 IPR001841 -
Apr3g1840 1287 SMART ring_2 969 1009 IPR001841 -
Apr3g1840 1287 MobiDBLite consensus disorder prediction 1089 1126 - -
Apr3g1840 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 861 1286 IPR027417 -
Apr3g1840 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 516 853 IPR027417 -
Apr3g1840 1287 MobiDBLite consensus disorder prediction 112 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1840 Apr-Chr3 34279351 34313243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1840 422 1286 RAD5 or RAD16-like Gene Family AT1G61140 60.738 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr3g1840 SNF2_N 8.4e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1840 - - gmx:100802436 1811.96