Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1838 ATGGATAACATTGTATTAAAGCTAACTAGTTTATACACCTTGGTTCTTTTACTTTTTCTATATTATAACCCTGTTGTTTCTTCTAGACATAGGCAACATAGGAGGGGTGAGAGGAAACTGAGCACTGGTCATAATGTTGATCTTGTGACTAATTTGCCTGGCCAACCTCATGTAGATTTCCAGCACTATGCTGGCTATGTCACAGTCAATGAAACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATCACCAAGCCAGAAGAGAAACCATTGGTGCTTTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGTCCTTTTTTAGTGGACACTGATGGCCAAGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTATTCAAATGTAACCAGTGATTATGAACAATTAGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTACAAAATTGGCTCCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGCTATGCAGGAAAGTATGTGCCAGAGCTGGCTGAACTCATTCATGATAGGAACAATGACCCCTCCCTTTATATTGATCTCAAGGGTATTTTGCTTGGTAACCCTGAAACATCTGATGCTGAAGATTGGATTGGTCTGGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAGACTCACCAAATAATCAAAACAAGTTGTGACTTTAACAGCAGTGATCCATGGCGCAATGAAGATTGTAGTCAAGCTGTGGATGAAGTACTTAAACAGTACAATGAAATTGATATCTACAGCCTCTACACCTCTGTTTGCTTTGCCAGTACAGCACGTTCAAATGGTCAACCCATGCAAACTTCAATGAATAAGCGTTCATCTAAAATGATGCCTAGGATAATGGGTGGGTATGACCCATGCCTGGATGACTATGCTAAAGCCTTTTATAATAGACCAGATGTTCAGAAGGCCCTCCATGCCAGCGATGGTTACAATCTCAAGAATTGGAGTATTTGCAACAACAAGATATTCAACAATTGGGCAGATTCAAAACCATCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCAGGACTTAGAATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTGCTTTCCACAAGGTACAGCTTAAGTTCTCTAGCTTTGCCTGTTACAAAGCCATGGAGACCTTGGTACCATGAAAATGAGGTTAGCGGTTGGGTTGAAGAATATCAGGGGCTAACATTTGCAACATTTCGAGGAGCTGGTCATGCAGTTCCATGTTTTAAACCAAGCAACTCACTTGCGTTCTTCTCTTCCTTTCTCAGTGGAGACTCACCACCTTCAACAAAATAA 1449 0.4127 MDNIVLKLTSLYTLVLLLFLYYNPVVSSRHRQHRRGERKLSTGHNVDLVTNLPGQPHVDFQHYAGYVTVNETNGRALFYWFYEAITKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGQGLKFNNFSWNREANMLFLESPVGVGFSYSNVTSDYEQLGDDFTANDAYTFLQNWLLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNNDPSLYIDLKGILLGNPETSDAEDWIGLVDYAWSHAVISDETHQIIKTSCDFNSSDPWRNEDCSQAVDEVLKQYNEIDIYSLYTSVCFASTARSNGQPMQTSMNKRSSKMMPRIMGGYDPCLDDYAKAFYNRPDVQKALHASDGYNLKNWSICNNKIFNNWADSKPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLALPVTKPWRPWYHENEVSGWVEEYQGLTFATFRGAGHAVPCFKPSNSLAFFSSFLSGDSPPSTK* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1838 482 ProSitePatterns Serine carboxypeptidases, serine active site. 192 199 IPR018202 GO:0004185
Apr3g1838 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 478 IPR001563 GO:0004185|GO:0006508
Apr3g1838 482 Gene3D - 334 370 - -
Apr3g1838 482 PANTHER CARBOXYPEPTIDASE 10 478 - -
Apr3g1838 482 Gene3D - 381 475 - -
Apr3g1838 482 SUPERFAMILY alpha/beta-Hydrolases 47 476 IPR029058 -
Apr3g1838 482 Pfam Serine carboxypeptidase 54 475 IPR001563 GO:0004185|GO:0006508
Apr3g1838 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 129 141 IPR001563 GO:0004185|GO:0006508
Apr3g1838 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 142 152 IPR001563 GO:0004185|GO:0006508
Apr3g1838 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 203 IPR001563 GO:0004185|GO:0006508
Apr3g1838 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 445 458 IPR001563 GO:0004185|GO:0006508
Apr3g1838 482 Gene3D alpha/beta hydrolase 43 302 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1838 Apr-Chr3 34261268 34264881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1838 339 476 Calmodulin-binding Proteins AT2G22960 34.532 2.34e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1838 K16297 - gmx:100815993 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1838 3 34261268 34264881 Apr1g1380 1 22841126 22847116 PCT