Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1835 ATGGATAGCACAGATTCATCATCAGGGTCTCAACACCCACACCCACATCTCCCTCCAGGGTTCCGGTTCCACCCTACCGACGAGGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTGCATCTGCACGCCTTCCCGTAGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGACCCTTGGGAGCTCCCAAGTAAAGCAACGTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATCGGAAATACCCAAATGGGGCCAGGCCCAATAGGGCTGCTATTTCTGGGTATTGGAAGGCCACTGGAACTGACAAGCCTATTCTAGCATCTGATGGGCACCAAAAAGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACTAATTGGATTATGCATGAGTATAGGCTTGCTAATGATTCCTTTAATTCTAGCTCAAAACCTCCTCCTCTTGCTGCTGATCATCGTCCAAACAATAACAAGAAAAATTCCCTAAGGCTTGACGATTGGGTTTTATGCCGAATATACAAGAAAAGCAATACTAGCACTTTACCAAGGCCACCCCTTATGGAGCATGAAGAGGAACTTTCAATGGAGAACATGCTACCCACGATGTCAACTTTGTCAATGGCTAATAATACGCAAAACTCTAAACCCCCATCTTCGAGAAACGCAAGTTATGGACCACTAGGACTTGAAAATGATGACAACTTTTTTGATGGAATCCTAGCCGCTGATCAGAGCATGCAAAACGGTTCTGATTCTCACCTAGTCTCTCCCAACTCAAAGGGTAATAATAACAATACTAGTAACTTCCCTATGAAACGTGCACTATCATCCCAGCTTTGGAACGAGACAGGATCTCCAGGGTCTTCTTCTTCAAGTAAGCGATTCCATGGTGATCTTAATAGTGGAAGCAGCACCGTTGAAGAAAACAATTCCTTTGTTTCTCTGCTTAGCCAGATTCCTCAAAACGCAACGTTACATCCAAACGCGATTCTTGGGTCAGTTGATGGTGCACTGAGGCAACAGTTTCAACTTCCGGGAATAAATTGGAACTGA 1083 0.4524 MDSTDSSSGSQHPHPHLPPGFRFHPTDEELVVHYLKRKAASARLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAAISGYWKATGTDKPILASDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLANDSFNSSSKPPPLAADHRPNNNKKNSLRLDDWVLCRIYKKSNTSTLPRPPLMEHEEELSMENMLPTMSTLSMANNTQNSKPPSSRNASYGPLGLENDDNFFDGILAADQSMQNGSDSHLVSPNSKGNNNNTSNFPMKRALSSQLWNETGSPGSSSSSKRFHGDLNSGSSTVEENNSFVSLLSQIPQNATLHPNAILGSVDGALRQQFQLPGINWN* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1835 360 ProSiteProfiles NAC domain profile. 17 185 IPR003441 GO:0003677|GO:0006355
Apr3g1835 360 MobiDBLite consensus disorder prediction 217 238 - -
Apr3g1835 360 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Apr3g1835 360 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 334 - -
Apr3g1835 360 SUPERFAMILY NAC domain 10 185 IPR036093 GO:0003677|GO:0006355
Apr3g1835 360 MobiDBLite consensus disorder prediction 257 316 - -
Apr3g1835 360 MobiDBLite consensus disorder prediction 217 235 - -
Apr3g1835 360 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g1835 360 Gene3D NAC domain 26 189 IPR036093 GO:0003677|GO:0006355
Apr3g1835 360 MobiDBLite consensus disorder prediction 149 170 - -
Apr3g1835 360 PANTHER NAC TRANSCRIPTION FACTOR 56 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1835 Apr-Chr3 34234407 34235957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1835 5 360 NAC Transcription Factor Family AT1G61110 52.446 1.02e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr3g1835 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1835 - - gmx:100797132 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1835 3 34234407 34235957 Apr1g1383 1 22883491 22885280 PCT