Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1818 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTGACGAAGAAAAGGAGTCCTTCTCGTGCTCCTAATGAGATTGATGGCTATCCACTTGATAATGTTGTGCATTTCTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGATAGGACGAGGAGGCTTTGGAACTGTTTATCAGGGAACCTTAAAAAATAGAAGACAAGTAGCAGTGAAGACACTTTCAGCTGGGTCAAAGCAGGGAGTTCGTGAATTTTTAACTGAAATTAAAACTATATCAAATGTTAAGCATCCAAACCTTGTTGAATTGATCGGTTGCTGTGTTCAAGAACCTAATCGTATATTAGTATACGAATACTTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCACAGGAGGTACACATACCAGATTAGATTGGAGAAGAAGATCTGATATTTGTATAGGTACTGCTAGAGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTACACAGGGACATTAAAGCTAGCAACATACTACTTGACAGACACTTTAATCCAAAAATAGGAGATTTTGGGTTGGCTAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGAGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGTGCAAGGACAAATTGGGGAGGGTCCAACAAATTTCTCTTGGAATGGGCTTGGCAACTGTATGAAGAGGGGAAACTGTTAGAGCTTGTGGATCCAGAGATGAGTGAATTTCCTGAGGAAGAGGTTGTTAGGTACATGAAAGTAGCTTTTTTCTGCACACAGGCAGCAGCAAGTAGAAGACCAATGATGTCTCAGGTTGTTGATATGCTTTCCAAGAACATCAGGATCAATGAAAAGCAACTAACAGCACCAGGGTTCTTCCAGGATTCGGGAGAATCCTCTCTAAAGAAGTCATCTTTTGAGTCCACAAGCTATCAATTCAGCTCTAACCCTGCCAGCATTACTCAGGTGACCCCTCGGTGA 1104 0.4121 MSCGCFGASTLTKKRSPSRAPNEIDGYPLDNVVHFSDKDLRLATDNYHPSKKIGRGGFGTVYQGTLKNRRQVAVKTLSAGSKQGVREFLTEIKTISNVKHPNLVELIGCCVQEPNRILVYEYLENNSLDRALLGTGGTHTRLDWRRRSDICIGTARGLAFLHEELVPHIVHRDIKASNILLDRHFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIISGKSSARTNWGGSNKFLLEWAWQLYEEGKLLELVDPEMSEFPEEEVVRYMKVAFFCTQAAASRRPMMSQVVDMLSKNIRINEKQLTAPGFFQDSGESSLKKSSFESTSYQFSSNPASITQVTPR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1818 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Apr3g1818 367 ProSiteProfiles Protein kinase domain profile. 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1818 367 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Apr3g1818 367 PANTHER - 1 359 - -
Apr3g1818 367 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 359 - -
Apr3g1818 367 SUPERFAMILY Protein kinase-like (PK-like) 31 351 IPR011009 -
Apr3g1818 367 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1818 367 Gene3D Phosphorylase Kinase; domain 1 20 122 - -
Apr3g1818 367 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Apr3g1818 367 CDD STKc_IRAK 53 319 - -
Apr3g1818 367 MobiDBLite consensus disorder prediction 348 367 - -
Apr3g1818 367 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1818 Apr-Chr3 34070802 34076408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1818 10 366 Receptor kinase-like Gene Family AT1G56120 48.179 1.44e-107 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr3g1818 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1818 - - gmx:100775344 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1818 3 34070802 34076408 Apr1g1398 1 23131275 23134473 PCT