Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1807 ATGCAGGGTGGTGATGTGTTGGAGCTTAACCTTGGTTTAGGAAACTTTACTAATCTTACAGGGCAGTCACCAAGGCCAAGATGCCCCGCACCATTTTTGTTGAAGACCTATGATTTGTTGGAAGAAGGTGAGGCTGAACATAGCACCAAAATTGTTTCATGGAATGGAGAAGGAACTGCTTTTGTTGTGTGGTCTCCAGCTGAGTTCTCTGAGCTCACTTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACATATGGATTTAAGAAAATATCATCGAAAAGATGGGAATTTAAGCATGAGAAATTTCAAAGGGGTTGCAAACATATGCTAGTTGAAATCACGAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTTCATACCTCAAGTCTTCTTCAGAGGAAAATGCAATGAGTTCCACAGAAGAAAACAATCACCAACTACTTATGGAAGAGAACAAGAACCTCAAGAAGGAGAAATTGGAGCTTCAAATGCAATTAGCCGAATGCAAAGCACTTGAAACAAAGTTGTTGGCATGTCTCTCTCAATTTACAGACAACCACCAAAATAAAGTTAGGAGACTATGTTAA 609 0.399 MQGGDVLELNLGLGNFTNLTGQSPRPRCPAPFLLKTYDLLEEGEAEHSTKIVSWNGEGTAFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCKHMLVEITRKKCEPSVFPSYLKSSSEENAMSSTEENNHQLLMEENKNLKKEKLELQMQLAECKALETKLLACLSQFTDNHQNKVRRLC* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1807 202 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 202 IPR027725 -
Apr3g1807 202 SMART hsfneu3 28 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g1807 202 Coils Coil 145 182 - -
Apr3g1807 202 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 21 202 - -
Apr3g1807 202 Gene3D - 26 125 IPR036388 -
Apr3g1807 202 SUPERFAMILY "Winged helix" DNA-binding domain 29 124 IPR036390 -
Apr3g1807 202 Pfam HSF-type DNA-binding 32 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g1807 202 PRINTS Heat shock factor (HSF) domain signature 32 55 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g1807 202 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g1807 202 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g1807 202 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1807 Apr-Chr3 33966224 33968837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1807 19 190 HSF AT5G62020 34.804 4.17e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr3g1807 HSF_DNA-bind 4.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1807 K09419 - gmx:100789792 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1807 3 33966224 33968837 Apr3g1807 3 33966224 33968837 ECH