Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1800 ATGGATGAGGATAGCAGCAATTCTTGGATAAGGAGGGCTAAATTCTCCCACACAGTGTGTCACAGATTGGACTACTCAAGTTCCAGGTTAGGCTCTTTCAGCATTCAGCCAAGGGTTGAGCACAAATCTGGTCTGAAATCAAGGCCAGGAAAAACAGCTCCTGTATCTCAGGCTTCACAGGTTCAGAAAAATCCCATAACAAACAAGCAGAGAGCTTTGTCCCCTTTGCCTGAAAGCTTTATCTCTGATACCTTTAAGGAAGCCAGGCATGAACAGAAGAGGTTCTCAACACCAGGTCCACGGAGGAAAGAGCAAGATAAGAGAATCATGGGAAAGTTACTGAACAAGGATTCTCAAGTGTCCAATTCTAAATCCCCTTATAACAGTCCAATTAGCCACTTGGTATCAATGAAATTAAGCGACAAGTCGAAGCAGCGTAAGGAATCTGGATGGACAAAGTATTTTGACCATGGTGGAGGAAAGGTTACTGCTGTGGAAACTGCTGAGGAATGGAATGTTGACCTCTCTAAGCTCTTTGTTGGTGTTAGGTTTGCTCATGGGGCTCACAGTAGGCTTTACCATGGCATGTATAAGGATGACCCTGTTGCTGTGAAAATTATCAGGGTACCAGATGATGATGAAACCGGATCATTGGCTGCTCGGTTAGAGAAACAATTCATTAGAGAAGTCACACTTTTATCTCGTCTCCACCATCAAAATGTTATAAAGTTCGTAGCAGCTTGCAGAGAGCCGCCTGTTTACTGTGTTGTCACAGAATATCTGTCAGAAGGTTCCTTGAGGGCATATTTACATAAGTTGGAGAGAAAAACCATTCCTTTACAGAAGCTGATTGCTTTTTCTCTTGACATTGCCCGTGGAATGGAATATATTCACTCTCAAGGTGTTATTCACCGAGACCTTAAACCAGAGAATATCCTCATTAATGGGGACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGCGACTTGTTTGCTGATGATCCTGGTACCTATCGTTGGATGGCACCCGAGATGATCAAACGAAAATCCTATGGGAGAAAGGTTGATGTATATAGTTTTGGGCTTATCTTATGGGAAATGGTGACTGGAACGATACCATACGAGGATATGACCCCCATCCAGGCTGCTTTTGCAGTGGTAAATAAGAATTTAAGGCCAGTTATTCCTTCAAACTGTCAACCTGCTATGCGAGCTTTAATTGAACAATGCTGGTCCTTGCATCCGGACAAGAGGCCTGAGTTCTGGCAGGTTGTTAAGGTATTAGAGCAATTTGAATCTTCGCTTGCTCGTGATGGAACGCTGGTTCTGGTGCAAAACCCTTGTTGCCAAGATCATAAGAAAGGGCTTCTCCATTGGATTCAAAAGCTTGGTCCTATGCATCATAATAATGGTCCTGTGCCTAAACCCAAATTTACATGA 1458 0.4314 MDEDSSNSWIRRAKFSHTVCHRLDYSSSRLGSFSIQPRVEHKSGLKSRPGKTAPVSQASQVQKNPITNKQRALSPLPESFISDTFKEARHEQKRFSTPGPRRKEQDKRIMGKLLNKDSQVSNSKSPYNSPISHLVSMKLSDKSKQRKESGWTKYFDHGGGKVTAVETAEEWNVDLSKLFVGVRFAHGAHSRLYHGMYKDDPVAVKIIRVPDDDETGSLAARLEKQFIREVTLLSRLHHQNVIKFVAACREPPVYCVVTEYLSEGSLRAYLHKLERKTIPLQKLIAFSLDIARGMEYIHSQGVIHRDLKPENILINGDFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTIPYEDMTPIQAAFAVVNKNLRPVIPSNCQPAMRALIEQCWSLHPDKRPEFWQVVKVLEQFESSLARDGTLVLVQNPCCQDHKKGLLHWIQKLGPMHHNNGPVPKPKFT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1800 485 MobiDBLite consensus disorder prediction 50 65 - -
Apr3g1800 485 SUPERFAMILY Protein kinase-like (PK-like) 163 434 IPR011009 -
Apr3g1800 485 MobiDBLite consensus disorder prediction 39 65 - -
Apr3g1800 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Apr3g1800 485 PRINTS Tyrosine kinase catalytic domain signature 258 271 IPR001245 GO:0004672|GO:0006468
Apr3g1800 485 PRINTS Tyrosine kinase catalytic domain signature 296 314 IPR001245 GO:0004672|GO:0006468
Apr3g1800 485 PRINTS Tyrosine kinase catalytic domain signature 342 352 IPR001245 GO:0004672|GO:0006468
Apr3g1800 485 PRINTS Tyrosine kinase catalytic domain signature 361 383 IPR001245 GO:0004672|GO:0006468
Apr3g1800 485 PRINTS Tyrosine kinase catalytic domain signature 405 427 IPR001245 GO:0004672|GO:0006468
Apr3g1800 485 Gene3D Transferase(Phosphotransferase) domain 1 263 459 - -
Apr3g1800 485 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 461 - -
Apr3g1800 485 CDD STKc_MAP3K-like 185 434 - -
Apr3g1800 485 Pfam Protein tyrosine and serine/threonine kinase 185 434 IPR001245 GO:0004672|GO:0006468
Apr3g1800 485 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 461 - -
Apr3g1800 485 SMART serkin_6 178 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1800 485 ProSiteProfiles Protein kinase domain profile. 178 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1800 485 Gene3D Phosphorylase Kinase; domain 1 166 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1800 Apr-Chr3 33855817 33860862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1800 1 485 MAP Kinase Kinase Kinase AT5G58950 57.656 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Apr3g1800 PK_Tyr_Ser-Thr 2.9e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1800 - - gmx:100784454 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1800 3 33855817 33860862 Apr1g1425 1 23488274 23492107 PCT