Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1789 ATGGCTTTTGAGCACTACGTTTCCCAGGAATGGAAAACCATCCCAAACCCTGAGACAGAGACAGAAAATTTGGATGGTTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTCGTCACCCTCTGTGGCCACCTCTATTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTCTGCAAGGATGATATATCTCATACCACTATGGTTCCTCTCTATGGCCGGGGCCAGGGCCTTGCCCATTGTGATCGTGATAGGAAAGCATCCTATAGAGACATCTTTATACCTCCAAGACCACCTGCATTGGGTGCTCAATCTTTGTTGCCAACATCATCTCAAAATGGTCAGCAACTTCCATATCGCAATCCTTATCAGACTCAGCATTTCGACCCTCCTTTATACCAAGAAGAGGATGACTCATCATCACAAATGCTCAATCTTGGGGCCACCATCACACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGGGAAATGTTTTATACCCGAGTCTTTGGGAACTCGGAAAATTTCTACACCTACCCAAATTCTTATTACCTGGTAGGAAGTAATAGCCCTAGGTTGAGGAGGCAAGAGATGCAGGCAGACAAATCATTGAACAGAATTTCAATTTTTCTTTTCTGTTGCTTTCTTCTGTGTCTTGTCGTCTTCTGA 723 0.455 MAFEHYVSQEWKTIPNPETETENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDISHTTMVPLYGRGQGLAHCDRDRKASYRDIFIPPRPPALGAQSLLPTSSQNGQQLPYRNPYQTQHFDPPLYQEEDDSSSQMLNLGATITPGFPHLVVGMFGEMFYTRVFGNSENFYTYPNSYYLVGSNSPRLRRQEMQADKSLNRISIFLFCCFLLCLVVF* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1789 240 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Apr3g1789 240 CDD RING-HC_AtRMA_like 28 77 - -
Apr3g1789 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 240 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr3g1789 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Apr3g1789 240 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Apr3g1789 240 SMART ring_2 30 76 IPR001841 -
Apr3g1789 240 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Apr3g1789 240 SUPERFAMILY RING/U-box 23 89 - -
Apr3g1789 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1789 Apr-Chr3 33755157 33757215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1789 17 226 C3H Transcription Factor Family AT4G27470 40.187 7.70e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1789 K10666 - gmx:100779793 411.379