Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1788 ATGGCGAGTGGGTTCTCCGGTTCAACGTCGATGATCGTCACCAACACGCCATCGCAGGACCTCGCCCTCACCAACCTCGCCTTTTGCTCAACCTCTGATCTTCCCCAATTCGCCGTTCCCTCTCACCACAACCTCTACCTCGCTTCCATCGCCGATTCCTTCGTCTTCTCTCTCTCTGCTCATGAAAGCATACGCAGTGGCCAAATTGCGTTGAATTCCATTCAACGTCGCTGCGCCAAAGTTTCTGCTGCTGAATCCGTACCTGTGAGCCGATTCGTGCCACCCGACAACTTCAACCTGGCATTGCTAACCCTTGAATTGGACTTCGTTAAAAAGGGAAATAAGAGTGAACAGATTGATGCTGTTGTACTGGCTAAGCAACTTCGGAAGAGATTTATGAACCAGGTTATGACTGCAGGGCAAAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTTACAGTCACTCAAGCTGCTGTTGAAGGCCAAGGAAAGTCTAATTCTCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTTGAAACATCACGGGATAGTGGAATTAAGATTGTCAATCAACGTGAGGGTGCCACAAGCAACATTTTCAAGCAAAAAGAATTTAACCTTCAGTCTCTGGGTATTGGTGGTCTGAGCGAAGAGTTTGCTGATATATTTCGAAGAGCTTTTGCCTCTCGAGTTTTCCCTCCCCATGTGACATCCAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACGTCAAATTGGGAAAATTTTGAATGGGAAGGAACCAAAGATTGTAAATGGCCCTGAGGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGATCTGTTTGCTGATGCTGAACAGGACCAGAGGACCCTAGGGGATGAAAGTGATTTGCATGTAATTATCTTTGATGAAATTGATGCTATTTGCAAGTCAAGAGGTTCAACTCGAGATGGTACTGGAGTTCATGATAGCATTGTAAACCAGCTTCTTACAAAGATAGATGGTGTGGAATCACTAAATAATGTTTTGCTTATTGGAATGACTAACAGAAAGGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAGTGGTCGATTGCAAATTCTTCAAATTCATACCAACAAAATGAAAGAGAATTCTTTTCTAGCTCCTGACGTGAACCTTCAAGAACTTGCTGCTCGAACAAAAAACTACAGTGGAGCAGAACTAGAAGGTGTTGTGAAAAGTGCAGTCTCGTATGCTTTAAACAGACAATTGAGTCTGGATGATCTCACCAAGCCAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCAAGAAGTTACTCCTGCATTTGGAGCTTCCACTGATAATCTTGAAAGATGCAGACTCCATGGCATGGTGGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTAGAACAAGTTAAAGTGAGTAAAGGAAGCCCACTTATTACTTGTCTGCTGGAAGGTTCTAGTGGCAGTGGTAAAACCGCCCTTGCAGCTACTATTGGTATTGACAGCGACTTTCCATATGTCAAGATAGTGTCGGCTGAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAAATTATTAAGGTTTTTGAGGATGCTTACAAATCACCTTTGAGTGTCATTATTCTTGATGATATTGAGCGATTATTGGAGTATGTGTCTATTGGTCCCCGTTTTTCAAACTTGATTTCTCAGACATTGATGGTTCTGCTGAAACGGCTTCCTCCAAAGGGTAAAAAACTCTTGGTTATTGGCACGACAAGTGAACTGGTTTTCTTGGATTCAATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTTCCTTCTTTGAACACTAATGATGCAAAGAAGGTCCTACAATATTTGAATGTTTTTTCGGATGAAGATATTGATTCTGCTGCAGAGGCGTTGAATGATATGCCTATCAAGAAGCTATACATGTTGATTGAGATGGCAGTGCAAGGGGAGCACGGTGGATCTGCAGAAGCTATCTATTCTGGCAAAGAGAAGATTAATATCTCTCATTTCTATGATTGCCTCCAGGATGTTGTGAGAGTATAA 2223 0.422 MASGFSGSTSMIVTNTPSQDLALTNLAFCSTSDLPQFAVPSHHNLYLASIADSFVFSLSAHESIRSGQIALNSIQRRCAKVSAAESVPVSRFVPPDNFNLALLTLELDFVKKGNKSEQIDAVVLAKQLRKRFMNQVMTAGQKVLFEYHGNNYSFTVTQAAVEGQGKSNSLERGMISDDTYIVFETSRDSGIKIVNQREGATSNIFKQKEFNLQSLGIGGLSEEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDESGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVEEENIKVTMDDFLNALQEVTPAFGASTDNLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLITCLLEGSSGSGKTALAATIGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVSIGPRFSNLISQTLMVLLKRLPPKGKKLLVIGTTSELVFLDSIGFCDTFSVTYHVPSLNTNDAKKVLQYLNVFSDEDIDSAAEALNDMPIKKLYMLIEMAVQGEHGGSAEAIYSGKEKINISHFYDCLQDVVRV* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1788 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 704 IPR027417 -
Apr3g1788 740 SMART AAA_5 529 650 IPR003593 -
Apr3g1788 740 SMART AAA_5 249 396 IPR003593 -
Apr3g1788 740 Pfam ATPase family associated with various cellular activities (AAA) 534 643 IPR003959 GO:0005524|GO:0016887
Apr3g1788 740 Pfam ATPase family associated with various cellular activities (AAA) 253 393 IPR003959 GO:0005524|GO:0016887
Apr3g1788 740 Gene3D - 396 487 - -
Apr3g1788 740 Gene3D - 8 92 - -
Apr3g1788 740 SUPERFAMILY ADC-like 8 92 IPR009010 -
Apr3g1788 740 SUPERFAMILY Cdc48 domain 2-like 95 198 IPR029067 -
Apr3g1788 740 CDD AAA 251 394 - -
Apr3g1788 740 Gene3D - 96 193 - -
Apr3g1788 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 492 IPR027417 -
Apr3g1788 740 Pfam Cell division protein 48 (CDC48), domain 2 118 181 IPR004201 -
Apr3g1788 740 Pfam AAA+ lid domain 420 475 IPR041569 -
Apr3g1788 740 Gene3D - 202 395 IPR027417 -
Apr3g1788 740 ProSitePatterns AAA-protein family signature. 364 382 IPR003960 GO:0005524|GO:0016887
Apr3g1788 740 Gene3D - 491 662 IPR027417 -
Apr3g1788 740 CDD AAA 534 641 - -
Apr3g1788 740 PANTHER VESICULAR-FUSION PROTEIN NSF 7 35 IPR039812 GO:0016887|GO:0035494
Apr3g1788 740 PANTHER VESICULAR-FUSION PROTEIN NSF 57 739 IPR039812 GO:0016887|GO:0035494
Apr3g1788 740 PANTHER BNAA03G50350D PROTEIN 57 739 - -
Apr3g1788 740 PANTHER BNAA03G50350D PROTEIN 7 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1788 Apr-Chr3 33736810 33749475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1788 217 468 Calmodulin-binding Proteins AT3G56690 33.071 3.05e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1788 K06027 - gmx:100779259 1323.53