Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1787 ATGGCAGCACCTTCACTCTCCGCAGCACTCACTTCTCTCTCCTCTCTGACCCTCTCAACCCCATCTCGCTTCTCTCTCCTCCCCACACCATCAAACAAACACTCTCTCTGCCTCGCCAAACCCTCACTCTTATCATCCCTCAAAGCCAAACCCCAAGACGACATCGACACCTCATTCTTCGACAACGTCAATCCCCGAGACGACATTCCCTTCGTACCCCCCGAAATCCCCGAAGGCTTCGTCCCCCCTCCCTCCTTCGATGACGGTCCCCCCGAAACCGAAGATGAAATTGCCGCCGCATACGAGGAGCTCTACGGCCCCGCCTACAGCGGAGTCAGCGTTCTCGGCAACGACATTTACGTGATGGACTCAAAGACCAAGAGGGACACTGGCTTCGGTTCCGGTGTCAAGAAAGAGAAGCTTCGAGATGGGTTCGAAGAGAGGGTGGTTCAGGTTCGGAGGGTGACGAAGGTGGTTAAGGGAGGGAAACAGTTACGCTTCAGAGCCGTTGTTGTTGTTGGTGACAAGAAAGGCCAAGTTGGCGTTGGCGTTGGCAAGGCCAAGGAAGTTATTGCTGCAGTTCAGAAGTCTGCTATTAATGCAAGGAGGAACATCATCAAGGTCCCTATGACTAAGTACTCCACTTTTCCACATAGATCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTAAGACCTGCTTCTCCTGGTACTGGAGTTATTGCAGGTGGGTCTGTGAGAATTGTTCTTGAAATGGCAGGAGTTGAGAATGCTTTGGGAAAACAAATAGGTAGTAATAATGCGCTCAACAATGCTAGAGCGACCATTGTTGCTGTGCAGAAAATGAGGCAGTTCCGTGAGGTTGCTGAGGAACGTGGGATTCCAATGGAAGAATTATGGAATTGCAGAAGGTGTGAATCTTCCATCATCAGGGAGGGAGTCCCATTACCATCGATTAAGGAACCACGCTGGGCTTCAATGTGTTCTTGA 990 0.5091 MAAPSLSAALTSLSSLTLSTPSRFSLLPTPSNKHSLCLAKPSLLSSLKAKPQDDIDTSFFDNVNPRDDIPFVPPEIPEGFVPPPSFDDGPPETEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKTKRDTGFGSGVKKEKLRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAINARRNIIKVPMTKYSTFPHRSDGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQIGSNNALNNARATIVAVQKMRQFREVAEERGIPMEELWNCRRCESSIIREGVPLPSIKEPRWASMCS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1787 329 Gene3D - 211 301 IPR014721 -
Apr3g1787 329 PANTHER RIBOSOMAL S SUBUNIT 49 300 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Apr3g1787 329 SUPERFAMILY dsRNA-binding domain-like 141 210 - -
Apr3g1787 329 Pfam Ribosomal protein S5, C-terminal domain 222 292 IPR005324 GO:0003735|GO:0005840|GO:0006412
Apr3g1787 329 TIGRFAM rpsE_bact: ribosomal protein uS5 144 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Apr3g1787 329 Pfam Ribosomal protein S5, N-terminal domain 145 209 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Apr3g1787 329 ProSitePatterns Ribosomal protein S5 signature. 162 194 IPR018192 -
Apr3g1787 329 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 49 300 - -
Apr3g1787 329 Hamap 30S ribosomal protein S5 [rpsE]. 122 298 IPR005712 GO:0003735|GO:0006412|GO:0015935
Apr3g1787 329 Gene3D - 133 206 - -
Apr3g1787 329 SUPERFAMILY Ribosomal protein S5 domain 2-like 215 293 IPR020568 -
Apr3g1787 329 ProSiteProfiles S5 double stranded RNA-binding domain profile. 145 208 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1787 145 285 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 6.45e-16 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1787 3 33733636 33736583 Apr3g1787 3 33733636 33736583 ECH