Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1786 ATGAAGTTTAACATTGCAAATCCCACCACTGGATGCCAGAAGAAGCTGGAAATTGATGACGACCAGAAACTTCGCGCATTTTGGGACAAGAGAATCTCACAGGAGGTTCTTGGTGATGCTCTTGGTGAGGAATTCAAAGGCTATGTTTTTAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTACGGCTGTTGCTCCATAGAGGAACTCCTTGCTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGGTGCATTGTCAGTCCTGACCTCTCTGTTTTGAACTTGGTAATTGTGAAGAAGGGTGAAAGTGATTTGCCAGGTCTGACTGATCTTGAGAAGCCAAGGATGAGGGGTCCAAAGAGAGCATCCAAAATCAGGAAACTGTTTAACCTGTCCAAGGAAGATGATGTGAGAAAGTATGTTAACACCTACCGCCGAACCTTTACAACAAAAGCTGGGAAAAAAGTAAGCAAAGCACCAAAGATTCAACGACTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGGATTTCAGATAAGAAAAAGAGAATTGCTAAGGCAAAATCAGAAGCAGCAGAGTACCAGAAACTCCTTGCATCTAGATTGAAGGAGCAGAGGGAACGCCGGAGTGAGAGCTTGGCCAAGCGGAGATCCAAAATTTCCAGTGCTTCCAAACCAACTGTCACAGCATAA 750 0.4587 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDLEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSASKPTVTA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1786 249 MobiDBLite consensus disorder prediction 220 249 - -
Apr3g1786 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Apr3g1786 249 Coils Coil 189 216 - -
Apr3g1786 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Apr3g1786 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Apr3g1786 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Apr3g1786 249 Gene3D - 133 234 - -
Apr3g1786 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Apr3g1786 249 MobiDBLite consensus disorder prediction 220 237 - -
Apr3g1786 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1786 Apr-Chr3 33710233 33712622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1786 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 71.084 3.99e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1786 K02991 - gmx:100786559 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1786 3 33710233 33712622 Apr1g1434 1 23654327 23656763 PCT