Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1782 ATGGACACAGGCAGGTCTGAGGGAAAGAGGACTTTGAGGTACAAAGAGGAGGAGGATGAGGAAGAAGAGGAAGAGGAAGAGATTAACGAGATGGGTTTCGGAGAAGATGGTAGAAGAAATAAGAGAGTAATGAGAGATCTCTGTGGTAAGAGAGGGTCCAAAGGTGGAAGCTCAATGCCACCTTCTTGTCAGGTGAATAACTGTGATGCTGATCTCAGTGAAGCTAAGCAGTATCATAGAAGACATAAGGTTTGTGAGTACCATGCCAAGGCTCCCTCCGTACACATTGCAGGGTTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTTCATGAGGTATCGGAATTTGATGACTCAAAAAGGAGTTGTAGGAGGCGTTTGGCGGGGCATAATGAGAGGCGTCGCAAAAATGCAGTTGATTACCATGGAGACTAA 435 0.4552 MDTGRSEGKRTLRYKEEEDEEEEEEEEINEMGFGEDGRRNKRVMRDLCGKRGSKGGSSMPPSCQVNNCDADLSEAKQYHRRHKVCEYHAKAPSVHIAGLQQRFCQQCSRFHEVSEFDDSKRSCRRRLAGHNERRRKNAVDYHGD* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1782 144 MobiDBLite consensus disorder prediction 1 41 - -
Apr3g1782 144 MobiDBLite consensus disorder prediction 17 31 - -
Apr3g1782 144 PIRSF SBP 1 144 IPR017238 GO:0003677|GO:0003700|GO:0009908
Apr3g1782 144 SUPERFAMILY SBT domain 61 141 IPR036893 GO:0003677|GO:0005634
Apr3g1782 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 137 IPR044817 GO:0003677
Apr3g1782 144 MobiDBLite consensus disorder prediction 1 16 - -
Apr3g1782 144 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Apr3g1782 144 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Apr3g1782 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 137 - -
Apr3g1782 144 Pfam SBP domain 63 136 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1782 Apr-Chr3 33650360 33652550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1782 56 140 SBP-box Gene Family AT2G33810 70.588 2.12e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr3g1782 SBP 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1782 - - gmx:100527199 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1782 3 33650360 33652550 Apr3g1782 3 33650360 33652550 ECH
Apr1g1438 1 23709663 23711589 Apr3g1782 3 33650360 33652550 ECH
Apr2g0412 2 4843679 4844994 Apr3g1782 3 33650360 33652550 ECH
Apr5g0124 5 1118038 1119433 Apr3g1782 3 33650360 33652550 ECH
Apr2g1904 2 24539727 24541372 Apr3g1782 3 33650360 33652550 ECH
Apr3g1782 3 33650360 33652550 Apr1g1438 1 23709663 23711589 PCT