Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1780 ATGCCGGCGCAGAGGCGCTCAAACGACGCTTCAGAGGTGGTTGCTCTGCGAAACGACCATGAGCAACCTGAAGATGAAGTTGAATCCGATCGAAGCGGTTCCTTGAGCGACGAAGACAAGGATGAATTTGTGGTTGTAAAATTGTCAGACATACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATACGAAAAACAAGAACTGTTATGGAATGCCTGCATCGCTTTTGCAGAGAGTGTATAGACAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACGCATTGTGCTAGCCGACGCTCTCTCAGAGATGACCCAAACTATGATGCTTTGATTGCTGCTCTCTATCCAAATATTGACAAGTACGAGGAGGAGGAATTGGCTTTGCATGCAGATGAGGTGATTCACAATAATCAGGTCCAAGCTTCCATTGCCCAGACTCTCCGACGTCAAACAGAAGCATTGAGTAAGAAACGGAATGCCAAAGCAACAACTATAGCTTTTGTGAGGAGATCACAAGGTAACTATCGAACTTCACATCTGAGGAGACGAAGAAGCTTCGTAAATGCTGGTGAACTTCAGGTATCCAATGAAAATGAGTATGTGAATGATAATGATGCGAGGAAGGACTCATCTTCTGGTGATGAGCCAACAGAAACCAGGTCAAGAAGAGGCAGAAGAGGTAGAGAACGAGAAACACAATTTCCTCATCACTTTGCTACCGCTGATGGAGATGGAACTGGTGATGAAAATATTCCAGAAGTGACTAGAGAAATCACAAGTCCATCTGGTACACTTGCATGGGGAAAGAATGGACACCGGAGTCACACCCGAGCCAATGGCAAGAATGCCAGGAACAGTCGCCTCTCCAAATTAGTTGATCATCTTCGAAACTCAGAAGTAAATGATGACAAGTTGGAAATCCCCCTCATGCTTGTCTCTTTGGATGAGCAAAGGATACCAAGTTTGCACGAGCCATACCTTTACTGCAAGCCTACCTTGTCAGTCAAGCAACTGTGCCAGTTTGTTGCAATTAAAACTATGCTGCTGGCTGATGAAGTTGAATTATGCTTGGTAGAAGAGCCACAAGCCAGCATTATAAGAGGAAAAAGAACCGTTGAGCCAGACAAAGATAAATTGCGTGTTCTTGGAGATCAAGAAACTTTGGCTGAGCTTGGGACTTATCATAATGTCAGCTGTGGTCATCTGCTCTTTGCTTATAAGTTGAAGTAG 1245 0.449 MPAQRRSNDASEVVALRNDHEQPEDEVESDRSGSLSDEDKDEFVVVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIDKYEEEELALHADEVIHNNQVQASIAQTLRRQTEALSKKRNAKATTIAFVRRSQGNYRTSHLRRRRSFVNAGELQVSNENEYVNDNDARKDSSSGDEPTETRSRRGRRGRERETQFPHHFATADGDGTGDENIPEVTREITSPSGTLAWGKNGHRSHTRANGKNARNSRLSKLVDHLRNSEVNDDKLEIPLMLVSLDEQRIPSLHEPYLYCKPTLSVKQLCQFVAIKTMLLADEVELCLVEEPQASIIRGKRTVEPDKDKLRVLGDQETLAELGTYHNVSCGHLLFAYKLK* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1780 414 MobiDBLite consensus disorder prediction 206 242 - -
Apr3g1780 414 SUPERFAMILY RING/U-box 44 128 - -
Apr3g1780 414 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 - -
Apr3g1780 414 MobiDBLite consensus disorder prediction 12 36 - -
Apr3g1780 414 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Apr3g1780 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 126 IPR013083 -
Apr3g1780 414 MobiDBLite consensus disorder prediction 191 254 - -
Apr3g1780 414 SMART ring_2 57 96 IPR001841 -
Apr3g1780 414 ProSiteProfiles Zinc finger RING-type profile. 57 97 IPR001841 -
Apr3g1780 414 MobiDBLite consensus disorder prediction 266 289 - -
Apr3g1780 414 MobiDBLite consensus disorder prediction 1 36 - -
Apr3g1780 414 PANTHER OS11G0578200 PROTEIN 1 414 - -
Apr3g1780 414 PANTHER OS11G0578200 PROTEIN 1 414 IPR044592 -
Apr3g1780 414 CDD RING-HC_RING1_like 57 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1780 Apr-Chr3 33624945 33629983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1780 41 191 C3H Transcription Factor Family AT2G30580 27.607 7.43e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1780 K10695 - zju:107425269 485.723