Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1774 ATGCAGATGCAAATTTTTGTTAAGACCCTCACTGGTAAGACTATCACCCTTGAAGTGGAGAGTTCTGACACCATTGACAATGTCAAGGCTAAGATTCAGGACAAAGAGGGCATCCCACCAGACCAGCAACGTCTGATTTTTGCTGGCAAGCAACTTGAGGATGGACGCACCCTTGCTGATTACAACATTCAAAAGGAGTCCACTCTCCACTTGGTGCTTCGTCTTCGTGGTGGTATGCAAATCTTTGTTAAGACCCTAACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACTATAGACAATGTCAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAACAGAGGCTCATCTTTGCTGGAAAACAGCTTGAAGATGGTCGAACATTGGCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCTTGTCTTGCGACTCCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGAAAGACAATTACATTGGAGGTAGAGAGCTCAGACACAATTGATAATGTAAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAGCAAAGATTGATTTTTGCTGGGAAACAGCTTGAAGATGGACGAACATTGGCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCTTGTCTTGCGACTCCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGAAAGACAATTACATTGGAGGTAGAGAGCTCAGACACAATTGATAATGTAAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCTGACCAGCAAAGATTGATTTTTGCTGGGAAACAGCTTGAAGATGGACGAACACTTGCAGACTACAACATTCAGAAGGAGTCCACCCTTCACCTCGTCCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACCTTGGAGGTTGAAAGTTCAGACACTATTGATAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGAGGTTAATCTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTCCGTGGTGGCTTTTAA 1152 0.4531 MQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1774 383 SUPERFAMILY Ubiquitin-like 305 382 IPR029071 -
Apr3g1774 383 SUPERFAMILY Ubiquitin-like 3 78 IPR029071 -
Apr3g1774 383 CDD Ubl_ubiquitin 79 154 - -
Apr3g1774 383 ProSitePatterns Ubiquitin domain signature. 333 358 IPR019954 -
Apr3g1774 383 CDD Ubl_ubiquitin 231 306 - -
Apr3g1774 383 SUPERFAMILY Ubiquitin-like 154 230 IPR029071 -
Apr3g1774 383 PANTHER UBIQUITIN 304 382 - -
Apr3g1774 383 PANTHER UBIQUITIN 77 285 - -
Apr3g1774 383 PANTHER UBIQUITIN 154 360 - -
Apr3g1774 383 PANTHER UBIQUITIN 2 208 - -
Apr3g1774 383 Gene3D - 155 230 - -
Apr3g1774 383 Gene3D - 1 78 - -
Apr3g1774 383 Gene3D - 307 383 - -
Apr3g1774 383 Gene3D - 231 306 - -
Apr3g1774 383 Gene3D - 79 154 - -
Apr3g1774 383 ProSiteProfiles Ubiquitin domain profile. 79 154 IPR000626 GO:0005515
Apr3g1774 383 ProSitePatterns Ubiquitin domain signature. 181 206 IPR019954 -
Apr3g1774 383 ProSiteProfiles Ubiquitin domain profile. 155 230 IPR000626 GO:0005515
Apr3g1774 383 ProSiteProfiles Ubiquitin domain profile. 3 78 IPR000626 GO:0005515
Apr3g1774 383 CDD Ubl_ubiquitin 3 78 - -
Apr3g1774 383 CDD Ubl_ubiquitin 155 230 - -
Apr3g1774 383 ProSiteProfiles Ubiquitin domain profile. 231 306 IPR000626 GO:0005515
Apr3g1774 383 ProSiteProfiles Ubiquitin domain profile. 307 382 IPR000626 GO:0005515
Apr3g1774 383 ProSitePatterns Ubiquitin domain signature. 29 54 IPR019954 -
Apr3g1774 383 Pfam Ubiquitin family 157 228 IPR000626 GO:0005515
Apr3g1774 383 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Apr3g1774 383 Pfam Ubiquitin family 233 304 IPR000626 GO:0005515
Apr3g1774 383 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Apr3g1774 383 Pfam Ubiquitin family 309 380 IPR000626 GO:0005515
Apr3g1774 383 CDD Ubl_ubiquitin 307 382 - -
Apr3g1774 383 ProSitePatterns Ubiquitin domain signature. 105 130 IPR019954 -
Apr3g1774 383 PANTHER UBIQUITIN 13 2 208 - -
Apr3g1774 383 PANTHER UBIQUITIN 13 304 382 - -
Apr3g1774 383 PANTHER UBIQUITIN 13 154 360 - -
Apr3g1774 383 PANTHER UBIQUITIN 13 77 285 - -
Apr3g1774 383 SUPERFAMILY Ubiquitin-like 230 306 IPR029071 -
Apr3g1774 383 SMART ubq_7 155 226 IPR000626 GO:0005515
Apr3g1774 383 SMART ubq_7 3 74 IPR000626 GO:0005515
Apr3g1774 383 SMART ubq_7 79 150 IPR000626 GO:0005515
Apr3g1774 383 SMART ubq_7 307 378 IPR000626 GO:0005515
Apr3g1774 383 SMART ubq_7 231 302 IPR000626 GO:0005515
Apr3g1774 383 PRINTS Ubiquitin signature 13 33 IPR019956 -
Apr3g1774 383 PRINTS Ubiquitin signature 34 54 IPR019956 -
Apr3g1774 383 PRINTS Ubiquitin signature 55 76 IPR019956 -
Apr3g1774 383 SUPERFAMILY Ubiquitin-like 78 154 IPR029071 -
Apr3g1774 383 ProSitePatterns Ubiquitin domain signature. 257 282 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1774 Apr-Chr3 33569796 33571945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1774 3 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.20e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1774 - K08770 psom:113311590 738.413