Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1764 ATGGAGGGCGAGGCCGGTTCGGAGGGAGACTATGATCGGAAAAGGGGTGGCTCAGATGATAATAGTAATGACAATAACAACAACAACAATGGAAGCAATAGCAAGGTTGTGAATTCCAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCTTTTCAGTTGGAAACCCTCGAGAAAGCTTATGCTTTGGATAATTATCCTTCGGAGACAATGAGGGTGGAGCTGTCTGAGAAGTTGGGGTTGTCGGATCGCCAGCTTCAGATGTGGTTCTGCCATAGGAGGTTAAAGGACAAGAAGGACTTGCCGCCCAAGAAACCTCCACGGAAGGCGGCGGTGGAGCCTTTGTTGGATTCCCCCACGGATGACCCTGAGATTGGTCATGAGTATGGATCTGGGTTGCGTTTGGGGTCCAGCCCATATGCTCGAACGGAGCCCCAGAATGCAGTTCCCCGGGGTGTGCCCAGTTATTACGAGTCCCCGCAGGCTAAGATGCAGCTTAGAGCAATTGCTTGTGTAGAGGCACAGTTAGGGGAGCCATTGAGGGAAGATGGACCCATTCTAGGAGTGGAGTTTGATTCATTGCCACCAGATGCATTTGGTGCACCTATAGCAACAGTTACAGAACGGCAGAAGCGACCTAGTTTTGCCTATGACGGCAAATTATATGAAAGACGTGATGTTAGAACAAATAAGGCTATGGCAAGGACATTCTGTGAATATCAATTTCAACCGAACCAATCTGGCATTAGGTCTGAAGGTTTTGGACAGTCCAGCAGATCTCATTTACATGATCCAATGGAGGGTCCTGCCAGAGATCCCCCACTTTTACTTGGAAATGAACAGCTATCTATAATTCATGCTACTGAAGGTCATTCTTCTCGAGTTCATCTTTTGTCTCAAGAAGACAAGCATGGGGTTCCCGATCAATCTCATTCTCAGGATGATGATGATGCTCCCCAAAGGGAGTTGTACACAAACAAAGCTAATGTCAGAATGAACTCCCAAATTGTTGGACCAGAAAATCCCAATGCTTTACCTAATGGGCAAGCTTTAAATAACAATGCAGTGCAGATTGAGAGGAAGCGAAAGAGTGATGATGCCAGAATTACAAAGGAAGTTGAATCCCATGAGATAAGGATCCAGAAAATGCTTGATAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGAATAAAAAAAGAAATGGAGAGACAAGATCGCGAAAGGAGGAGGGAAGAAGAGAGGTTGATGCGGGAGAGACAGAGAGAAGAGGAAAAAGCAAAACGGGAGCAGAAACGGGAAATTGAACGAAGGGAAAAACTTTTGGTGAAAGAAAATTTAAGGGCAGAGAAAATGAAGAGAAGAGAAGAGCTTCGCAAAGAGAAAGAGGCAGAGAGAAGGAAAGCTGCCCTTGAGAAGGCAACTGCCCGAAGAATGGCTAAGGAATCTATGGAACTTATGGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAAGGGTTTTACTCTATTATCCATCTTGATTTTGATACTCTGCAAAATCTTGAGTCATTTAGGGATTCATTGAGTGTTTTCCCACCAAAGAGTGTAAGGCTAAGAAAGCCATTTGCAGTCAAACCCTGGATCAACTCAGAAGAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTTATTACTTTTGCTGATGTTCTGGAGTTATGGCCTTTTACTCTAGATGAGTTTGTTCAGGCACTTCATGACTATGATTCAAGATTGCTGGGTGAGATACATGTTGCTCTTCTTAAGTTGATAATAAAAGACATTGAAGATGTTGCAAGGACGCCTACAGGATTAGGAATGAGTCAGAATGGTGCTACTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCTTGGGGATTTAACATACGAAATTGGCAAATGCACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGCTAGCACTATCTGCAGGATATGGACCACAGTTCAAGAAAAGAAGTATCACCTGGTCAAAAGCAAATGATAAAGATGAGGGAAGAAGTTGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCTGCCAAAAATGCAGTTGCAAAAATGCATGAAAAAGGTCTATTAGCTCCTCGAAAATCTAGGCACCGGTTAACTCCTGGAACTGTTAAGTTTGCTGCGTTTCATGTTCTCTCTCTTGAGGGTAACAAGGGGTTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTAACAACAAGCAAAACACCTGAGGCATCAATTTCTGTTGCATTAACAAGAGATGCCAAACTTTTTGAAAGGACAGCTCCATCAACATATCGCCTACGTGCTGCATTTAGAAAGGATCCTGCTGATACTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGCAAATGGGTTTCAAGCTGGGGAAGATGCTGATGATGTTGAAAGAGAGGAGTCAGAAAGTGATGAACTTGATGAGGACCCTGAAGTTGATGATTTGTTAAATCCACCAAGTGCTAACAAAACATCTGAACAGTGTGATGATTTCTCATCAAATGGAAAAGAAAATTTGGGTTGTAATGTTGAACTTCAAGAGGAGTTTGATAAGGATCTGTCTTGTTTTCCTGAGAGTGGTTCCAAGAATGCTGATAGTTCCAGTGCTATCACTGGACAACCTGGTGCTAGTGAATATCTGAATGCTGGAAATCTTGGTGAAGATAATAAAGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGACTTGCAGAAGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTATTGATTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATACTCTGAAGAAGCACAAGTGGGCAGAAGCACAGATAGATAAATTTCGTCTAAAAGATGATAATTTCAGTGGGAATAAAGTTGAAACTCAATACACATGTCCTGCTGTGGAGGGAAACAAAAGTCCATTGCTTGACATTAATATTGGCCACAATAATAATAATGAGGCATCACCCAGCACTGCAGAAAATCAAAAGTTAGCTTCTGTTGTACTGAGCCTGTCTATTGAGAAGCACTCATCAGGTCATGATCTCTGCAGTGTTCCAGATAACCTGCAGACTCAGCCATTTTCACAATTTTCAAAAAGGTCACGTTCTCAATTGAAAACTTATATTTCCCACATGGTGGAGAAGATGTATGTCTACAGATCCTTACCCCTGGGGCAAGATCGCAGACATAACCGTTATTGGCAATTTGCTTCATCTGCTTCTTCCGATGATCCTGGTACTGGCAGAATCTTTATTGAATATCATGATGGCAATTGGAGGCTCATTGATTCTGAGGAGGCCTTTGATGTGCTTTTGAATTCACTTGATTCACGTGGGATCAGGGAATCTCATTTGCGTCTTATGTTGCAAAAGATTGAGAGTTCCTTCAAGGAAAATGTTCGAAAGAATACCCAATGTGCCAAAATTAGAATCGGAGGTGAAATTTGTGTTAAAAATGAAGTTGATGAAACAGATTCCAGTCCTGATTGCCATACTGGATCTGACAGTCCTAGCAGTACCCTCTGTGGCTTGAATTCTGATACTTCCGAAGCTTCATCATCCTTTAAAATAGAGCTTGGGAAAAGTGAGAGCGACAAGAAATCTGCGTTTAGAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTACAACTCATCTGTATTATCTGCAATGAAATATGGGAAAAAGAGATGCAAACCTCTGGCTGTCATCTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAATAGTTGCCACCGGACTTTTCCCTCAAGTAATGGATTTAATTTTTCTGAACATGCTTTTCAATGTGGAGACAAGTCATCAAAAGATATTTGTATTTCGGATTCTTCTCTTCCCTTGCGAACAAGATTGGTTAAGGCCCTTCTGGCTTTTATTGAGGCATCTGTTCCACCTGAAGCATTTCAATCAATTTGGACAGAAGATATTAGGAGGCATTGGGGTATGAAATTGAGCAAATCATCTTCTGTTGAAGAACTGCTACAGATATTGACCCAATTTGAGAGAGCATTAAAACGAGATTTTTTATCATCAACCTTCTCAACCACGGTGGAACTGTTGGGGTTGAGCACTGTGTCAGAGGGCGCTGCGAATACCACTACTGATCCTGAAGCAGTTGCTGTACTTCCATGGGTTCCAATGACAACTTCAGCTGTGTTACTAAAACTTTTTGAGTTTGATGCATCCATTGTCTACGTTCTGCATGATAAGTCTGAGCCTTGTGAGAAGAAAGATAGAGAATACATTAAGCTTCGTTCAAGATATAATCCTTCCAAATCTAGTAAAGTGGCTGAAGCAGCAGGCTTGGACCATGATGAATTCATGAACGTTAAATCTACTCCTGTGAAAATTGTGCGAAGCAACAATAAACGTGGTCGGGGGAGTCATGATAATGGACAGGGTAAAAAGCTATTTAAAACATTGTATGGTTCCAAACAAGATACAGGCCGCCATAAAGTTAAGGTCACTGAGAATCTAAGTGAAAGGATAAAGCAGCAGGGAGGAGGATCACAAGGACAAGCTGGTGGACGCGGTCGCCGAACAATCAGGAAAAGAAGAGCAGAGAAAAGGGCTGTTGAAGATTTGCTGCTGAGCCATAGGGGTGCTACTCGTAGTTCCAATACTGTTATAGAACCACTGAGAAGCTTGGTTGAGGACTCAGATGATGAAAAGGCTTGTCTTGTGACTCCCATCCACATGGGAGCTGCTGACATTAATAACAGTGCTGAAGAAGCTGAATCTGATGACAATGTCCAAGCTGTGGAGTATGATAAAGGAAACTGGGAGATAGGTTTTAATGGTACCGCCAATAGATGGAGTAGGGATTTGGTTAGAGTGAGTGATGATGATGTGGAAGTTTCTGAAGATGATAATGACAATGATAATGAGAATAGCAATGGGGAGAATGAAGAGGATGGTTCAGAGGCAGATTTTATGAGTGAGGGTTCAAATGGTGTGGCAAATGGAGTTGTAGATGAAGATAACTCAGACTCTGATGTCTCTGAAGATTCTTCTGATTAG 5223 0.4218 MEGEAGSEGDYDRKRGGSDDNSNDNNNNNNGSNSKVVNSNEGQSKPKRQMKTPFQLETLEKAYALDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKKDLPPKKPPRKAAVEPLLDSPTDDPEIGHEYGSGLRLGSSPYARTEPQNAVPRGVPSYYESPQAKMQLRAIACVEAQLGEPLREDGPILGVEFDSLPPDAFGAPIATVTERQKRPSFAYDGKLYERRDVRTNKAMARTFCEYQFQPNQSGIRSEGFGQSSRSHLHDPMEGPARDPPLLLGNEQLSIIHATEGHSSRVHLLSQEDKHGVPDQSHSQDDDDAPQRELYTNKANVRMNSQIVGPENPNALPNGQALNNNAVQIERKRKSDDARITKEVESHEIRIQKMLDKQDNLRRKSEERIKKEMERQDRERRREEERLMRERQREEEKAKREQKREIERREKLLVKENLRAEKMKRREELRKEKEAERRKAALEKATARRMAKESMELMEDEQLEMMELAASSKGFYSIIHLDFDTLQNLESFRDSLSVFPPKSVRLRKPFAVKPWINSEENVGNLLMVWRFFITFADVLELWPFTLDEFVQALHDYDSRLLGEIHVALLKLIIKDIEDVARTPTGLGMSQNGATNSGGGHPEIVEGAYAWGFNIRNWQMHLNQLTWPEIFRQLALSAGYGPQFKKRSITWSKANDKDEGRSCEDIISTLRNGSAAKNAVAKMHEKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGNKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERTAPSTYRLRAAFRKDPADTESILSEARKKIQIFANGFQAGEDADDVEREESESDELDEDPEVDDLLNPPSANKTSEQCDDFSSNGKENLGCNVELQEEFDKDLSCFPESGSKNADSSSAITGQPGASEYLNAGNLGEDNKEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLIGVANEGNSIRVVLEDRLEAANTLKKHKWAEAQIDKFRLKDDNFSGNKVETQYTCPAVEGNKSPLLDINIGHNNNNEASPSTAENQKLASVVLSLSIEKHSSGHDLCSVPDNLQTQPFSQFSKRSRSQLKTYISHMVEKMYVYRSLPLGQDRRHNRYWQFASSASSDDPGTGRIFIEYHDGNWRLIDSEEAFDVLLNSLDSRGIRESHLRLMLQKIESSFKENVRKNTQCAKIRIGGEICVKNEVDETDSSPDCHTGSDSPSSTLCGLNSDTSEASSSFKIELGKSESDKKSAFRRYQDFQKWMWKECYNSSVLSAMKYGKKRCKPLAVICDICLNPYFFEDSHCNSCHRTFPSSNGFNFSEHAFQCGDKSSKDICISDSSLPLRTRLVKALLAFIEASVPPEAFQSIWTEDIRRHWGMKLSKSSSVEELLQILTQFERALKRDFLSSTFSTTVELLGLSTVSEGAANTTTDPEAVAVLPWVPMTTSAVLLKLFEFDASIVYVLHDKSEPCEKKDREYIKLRSRYNPSKSSKVAEAAGLDHDEFMNVKSTPVKIVRSNNKRGRGSHDNGQGKKLFKTLYGSKQDTGRHKVKVTENLSERIKQQGGGSQGQAGGRGRRTIRKRRAEKRAVEDLLLSHRGATRSSNTVIEPLRSLVEDSDDEKACLVTPIHMGAADINNSAEEAESDDNVQAVEYDKGNWEIGFNGTANRWSRDLVRVSDDDVEVSEDDNDNDNENSNGENEEDGSEADFMSEGSNGVANGVVDEDNSDSDVSEDSSD* 1741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1764 1740 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 937 979 IPR028942 -
Apr3g1764 1740 Pfam DDT domain 551 606 IPR018501 -
Apr3g1764 1740 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 16 1740 IPR044977 GO:0006357
Apr3g1764 1740 SMART testlast3 550 609 IPR018501 -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1213 1233 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1563 1586 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 832 853 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 303 322 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 857 872 - -
Apr3g1764 1740 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Apr3g1764 1740 Coils Coil 375 443 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1683 1711 - -
Apr3g1764 1740 Coils Coil 446 477 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 387 435 - -
Apr3g1764 1740 CDD homeodomain 47 96 IPR001356 GO:0003677
Apr3g1764 1740 SMART HOX_1 44 106 IPR001356 GO:0003677
Apr3g1764 1740 Pfam Homeodomain 45 101 IPR001356 GO:0003677
Apr3g1764 1740 MobiDBLite consensus disorder prediction 99 154 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g1764 1740 SUPERFAMILY Homeodomain-like 32 101 IPR009057 -
Apr3g1764 1740 Pfam HB1, ASXL, restriction endonuclease HTH domain 731 799 IPR007759 GO:0006355
Apr3g1764 1740 MobiDBLite consensus disorder prediction 248 278 - -
Apr3g1764 1740 ProSiteProfiles HARE-type HTH domain profile. 731 800 IPR007759 GO:0006355
Apr3g1764 1740 PANTHER HOMEOBOX DOMAIN PROTEIN 16 1740 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 896 925 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1 55 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 99 113 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 828 872 - -
Apr3g1764 1740 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1108 1180 IPR028941 -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 21 51 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1218 1233 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 1681 1740 - -
Apr3g1764 1740 Gene3D - 28 103 - -
Apr3g1764 1740 MobiDBLite consensus disorder prediction 898 917 - -
Apr3g1764 1740 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1764 Apr-Chr3 33478289 33490094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1764 38 1706 Homeobox Transcription Factor Family AT1G28420 47.029 0.0 1304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Apr3g1764 WSD 6.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1764 - - aprc:113857600 3096.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1764 3 33478289 33490094 Apr3g1764 3 33478289 33490094 ECH
Apr3g1764 3 33478289 33490094 Apr1g1457 1 23942260 23952760 PCT