Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1754 ATGGCTGGTTTGATCGATCTCAACAACACCACCGAGGACGATGAAACGCCGTCGTTTGGTTCCTCCTCCGTGTGCTTGGAACTGTGGCACGCGTGCGCGGGTCCTATGATCTCCTTGCCTAAGAAGGGAAGCGTTGTCGTGTACTTTCCTCAAGGACACTTGGAACACCTTCACGATTTTCCGCTCCCTGCCTCTCTTAATATCCCTTCCCATGTGTTCTGTCGCGTTGTTCATGTCAACCTTCATGCTGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTGTTGTTGGTCCCTGAAAGTGAGCAAGTGCAGCAAAAGTTGCGAGGAGGGGAAATTGATGCTGACGGGGAAGAGGAGGATAATGAAGCTGTGATGAAGTCAACACCCCACATGTTCTGCAAGACTCTTACTGCTTCTGATACCAGCACTCATGGAGGGTTCTCTGTGCCTCGTCGTGCTGCTGAGGATTGCTTTCCTCCCCTGGATTACAGCCTACAGAGACCTTCACAGGAGCTTGTGGCAAAGGATCTGCATGGCCAGGAATGGAGGTTTCGACATATTTACAGGGGGCAACCTCGAAGACACTTACTTACTACTGGATGGAGTGCATTTGTGAACAAGAAGAAACTTGTGTCCGGGGATGCCGTACTGTTTCTTAGGGGTGATGATGGGGAACTGAGATTGGGAATTCGTCGGGCTGCCCAACTGAAAAGTGGCAGTGCCTTTTCAACACTCTCCAGCCAGCAATTGAATCCTAGCTGTCTTATGGAAGTGGTTAATGCTTTATCTACAAGATGTGCCTTTAGTGTTCATTATAATCCGAGGGTCAACTCATCTGAGTTCATCATACCTGTCCAAAAATTTTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGATTCACAGGATTGATTGTTGGAATTAATGATGTGAATCCTGTTAGGTGGCCTGGATCAAAATGGAGATGCCTACTGGTGAGGTGGGATGACTTAGAAACCACAAGGCATAATAGGGTTTCTCCATGGGAGATTGAACCATATGGTTCTGCTTCCACTGCCAATAACTTGATAGCAGCTGGTTTGAAAAGGACTAAGATTGGATTGCCTTCAGCAAAGCTAGAATTTCCAGTTCCCAATGGGATTGGGACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTTGATAGTATTAGTGCTCAGAGTCACCAACTATCTGAATTAAGGAGGTGCTATCCTGGTTCAAACTGTCCTGGGATCGCTGCAACGACAGGAAATAGTATCAGAATCCCACAAGTGAGTTCTGATCTTTCCTGCAACGGCATAGGCTTTAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGCTAGGGCCTTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACTTTTCGATGGTTACCAGGCACTGAGATCCAAAAATGGATGGTCTTCCAACATGAATAACAATTCTTCACTTTTGCATCCACCGGTTCCATCCAGGCAAGTGTCATCTCCATCATCCGTGTTAATGTTCCAGCAAGCAGTCAATCCGGTTTCAACCTCGGATTATAACAATAAAATCAATCAGGTGATGAAGGATAAAGTCCATCAACGAGGTTCATATGCTTCTGAAGTAGAAGGTGGAACTTTTGTATCAACTCCTGCTTATGAACCTATTCTTTGTGGACTAGCTCATGAGGGCACAAATTCTTTTGCTATTTCAAAATTGCATAATCAGTTGGATAGTTCATGCTCACATGATTCCATTTCAGTACTGAGAGGCAGTCAAGAGTTGGTTTCCTCTTGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTAACAGAGGGTGCTCCTGTTGCTAATAAAGAGGCTGATGCATCTCCAGTCGCTTGTCAATTAAATTCTGGAGCTTCCTTTACAAGGCATGTTGAAGATGATTTTCATCCAGGGCATTCGCTTAGAAACAAGGCAGTTGGAAGTTATTGCACCAAAGGTGTGCTGCAGTATTGA 2133 0.4501 MAGLIDLNNTTEDDETPSFGSSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLPASLNIPSHVFCRVVHVNLHAEEGSDEVYCQVLLVPESEQVQQKLRGGEIDADGEEEDNEAVMKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKSGSAFSTLSSQQLNPSCLMEVVNALSTRCAFSVHYNPRVNSSEFIIPVQKFLKSLDYSYSVGMRFRMRFETEDAAERRFTGLIVGINDVNPVRWPGSKWRCLLVRWDDLETTRHNRVSPWEIEPYGSASTANNLIAAGLKRTKIGLPSAKLEFPVPNGIGTSDFGESLRFQKVLQGQEMLGVNTTFDSISAQSHQLSELRRCYPGSNCPGIAATTGNSIRIPQVSSDLSCNGIGFSESFRFQKVLQGQEILPSQPYARALSVDEACGNGRFGLFDGYQALRSKNGWSSNMNNNSSLLHPPVPSRQVSSPSSVLMFQQAVNPVSTSDYNNKINQVMKDKVHQRGSYASEVEGGTFVSTPAYEPILCGLAHEGTNSFAISKLHNQLDSSCSHDSISVLRGSQELVSSCKSSCRVFGFSLTEGAPVANKEADASPVACQLNSGASFTRHVEDDFHPGHSLRNKAVGSYCTKGVLQY* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1754 710 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Apr3g1754 710 SMART B3_2 132 234 IPR003340 GO:0003677
Apr3g1754 710 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Apr3g1754 710 Gene3D - 295 369 - -
Apr3g1754 710 PANTHER AUXIN RESPONSE FACTOR 15 710 - -
Apr3g1754 710 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 710 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr3g1754 710 SUPERFAMILY DNA-binding pseudobarrel domain 126 244 IPR015300 -
Apr3g1754 710 Pfam Auxin response factor 259 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr3g1754 710 CDD B3_DNA 130 232 IPR003340 GO:0003677
Apr3g1754 710 Gene3D - 130 234 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1754 Apr-Chr3 33313298 33319053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1754 21 519 B3 DNA Binding Superfamily AT5G60450 48.532 1.90e-143 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr3g1754 B3 2.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1754 K14486 - gmx:100808119 1193.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1754 3 33313298 33319053 Apr3g1754 3 33313298 33319053 ECH