Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1743 ATGGCTTCTTCCAACAGACACTGGCCAAGCATGTTCAAGTCCAAGCCCTGCAACCCTCATCACCAATGGCAGCATGACATCAACTCCTCTCTCATGTCAAGAACCCCTTTTTCTTCAGGTTCATATTGTGATGAGAGGAGTCCAGAGCCAAAACCGAGATGGAACCCAAAGCCTGAGCAAATACGCATACTGGAAGCCATTTTCAACTCTGGGATGGTGAATCCTCCAAGGGAGGAGATAAGGAAGATCCGGTTACAGTTGCAAGAGTATGGGCAAGTGGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGTAAATCAAGAAGCAAGCACAAGCTCCGCCACCTCCAAAACTCGAAGAACCCAAACTTAGAAGCACAGCAAAACGCTGCTTCTCTCCCTCAAATCACAGCTCCTTCATCCTCTTCTTCTTCCTCTGAGAAGTCCTCTTCCAAAGAAATGATATACCCTACCAAGGGTTTCTCCATTGGCTTCTCAAATGTCAATGATGTGGTGCCTAATTCACCCACCGCCTCTGTGAACCAGAATTATATTCAGTCTCACCTTCACAATGACACCAATTTGCTACCACCAACACCTGAGCCTTTTTCTTTCCCTCTGCACCATAATGGTCAAGGAGCAATGCTTAATGCCATGGCAACTACTCAAGGATTTTGCTTTTCTGAGTTCAACAGCATGATTCAACCTCAATATCAACAAAATTTTGGGCCTTGCACTAGTCTTTTGCTTAATGAGATGGTGAACCATGGAAACACCTCAAAGAAAGACCATGATCAAGACAAGGCCATGAAGATAATGCACCAACACCCACAGCTTGGTTTTTGTCTCACTTCAGCTCCAACTACCAGCGATGTTCCTCCCATCAGCAACATACCCATCAATGCTATTCCATCTCCCATCACTCAACTTCAGGGTACAGGTAGGTCAAAATGTACAGTGTTCATTAACGATATTGCATTTGAGGTTGAGGTGGGACCCTTCAATGTGCGTCAAGCCTTTGGGGAAGAAGCTGTGCTAATCCATTCTTCTGGCCAACCCGTTCTCACTGACGATTGGGGCGTTACCCTCCAATCACTCCAACATGGAGCATACTATTATCTGATATAA 1128 0.4566 MASSNRHWPSMFKSKPCNPHHQWQHDINSSLMSRTPFSSGSYCDERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRLQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNPNLEAQQNAASLPQITAPSSSSSSSEKSSSKEMIYPTKGFSIGFSNVNDVVPNSPTASVNQNYIQSHLHNDTNLLPPTPEPFSFPLHHNGQGAMLNAMATTQGFCFSEFNSMIQPQYQQNFGPCTSLLLNEMVNHGNTSKKDHDQDKAMKIMHQHPQLGFCLTSAPTTSDVPPISNIPINAIPSPITQLQGTGRSKCTVFINDIAFEVEVGPFNVRQAFGEEAVLIHSSGQPVLTDDWGVTLQSLQHGAYYYLI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1743 375 Gene3D - 51 117 - -
Apr3g1743 375 SMART HOX_1 49 116 IPR001356 GO:0003677
Apr3g1743 375 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 375 - -
Apr3g1743 375 Pfam Homeodomain 51 111 IPR001356 GO:0003677
Apr3g1743 375 ProSiteProfiles 'Homeobox' domain profile. 47 112 IPR001356 GO:0003677
Apr3g1743 375 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 375 IPR044557 GO:0003700|GO:0050793
Apr3g1743 375 MobiDBLite consensus disorder prediction 34 57 - -
Apr3g1743 375 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g1743 375 SUPERFAMILY Homeodomain-like 47 115 IPR009057 -
Apr3g1743 375 MobiDBLite consensus disorder prediction 128 153 - -
Apr3g1743 375 CDD homeodomain 50 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1743 Apr-Chr3 33175850 33178551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1743 1 375 Wox Gene Family AT2G33880 46.890 1.16e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr3g1743 Homeodomain 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1743 - - gmx:100777643 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1743 3 33175850 33178551 Apr3g1743 3 33175850 33178551 ECH