Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1727 ATGACGAACAATCTATTTGCTACTGAAACTGAGGTTCAAAAATTAGTAGAACAATTAAAGAACAATTCTCTTGATACTAAGAGAGACACAATAATAGAACTCCACCTTCTTGCTAAGCACAGTATGGATAACAGAATAGTGATTTCAAATTTTGGTGTCATTAGCTTATTAGTTAATTTACTTCAATCAACTGATACTACAATCCAGGAAAATTATATTACAACACTCCTTAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGGGCCATTGAACCTTTGATTCATGTCCTTAAGATAGGGAGTTCAGAAGTCAAGGAGAACTCAGCTGCCACACTTTTCAACTTATCGGTAATTGAGGAAAATAAAATCAAGATAGGGAGGTCTGGGCTAATTAGACCATTGGTTGATTTATTTGAGAATGGAAGCCCTAGAGGGAAAAAAGATGTTGTCACTACTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATCATGCAAGCTGGTGCTATGAAGCATCTTGTAGAGTTAATGGACCTTGCTGTTAGAATGGTTGATAAGGCGGTGGCTGTTTTAGCAAATCTTGTCACAATACCAGAAGAGAAGACAACAATTGGTCACGAATGTGGTATTCCTATTCTAAGTGAGGTCATTAAGTTGGGTCCTTGA 687 0.3595 MTNNLFATETEVQKLVEQLKNNSLDTKRDTIIELHLLAKHSMDNRIVISNFGVISLLVNLLQSTDTTIQENYITTLLNLSINDNNKTAIANAGAIEPLIHVLKIGSSEVKENSAATLFNLSVIEENKIKIGRSGLIRPLVDLFENGSPRGKKDVVTTLFNLSIFHENKDRIMQAGAMKHLVELMDLAVRMVDKAVAVLANLVTIPEEKTTIGHECGIPILSEVIKLGP* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1727 228 SUPERFAMILY ARM repeat 10 209 IPR016024 -
Apr3g1727 228 Pfam Armadillo/beta-catenin-like repeat 125 162 IPR000225 GO:0005515
Apr3g1727 228 Pfam Armadillo/beta-catenin-like repeat 82 121 IPR000225 GO:0005515
Apr3g1727 228 Pfam Armadillo/beta-catenin-like repeat 43 80 IPR000225 GO:0005515
Apr3g1727 228 Gene3D - 3 227 IPR011989 -
Apr3g1727 228 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 227 - -
Apr3g1727 228 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 93 135 IPR000225 GO:0005515
Apr3g1727 228 SMART arm_5 123 163 IPR000225 GO:0005515
Apr3g1727 228 SMART arm_5 41 81 IPR000225 GO:0005515
Apr3g1727 228 SMART arm_5 164 203 IPR000225 GO:0005515
Apr3g1727 228 SMART arm_5 82 122 IPR000225 GO:0005515
Apr3g1727 228 PANTHER U BOX DOMAIN-CONTAINING 3 227 - -
Apr3g1727 228 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 52 94 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1727 Apr-Chr3 32991708 32992720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1727 4 227 U-box Gene Family AT2G23140 69.643 9.78e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1727 - - aprc:113859862 437.573