Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1720 ATGGACCTCACCAAGAAGCGCAAAACGGAAGAGAACGGCGATGCCAATTCTACGCCGCCACCGTCTTCCGACGCTGCCGTCGCAACCACCACTCCCCTCGACGCAGAAGACATCCGCAAGATCCTCCAACCCTTCTCCCAGGACCAGCTCCTCGACCTCCTCCAATCAGCCTCCCTCCGCCACCCCGACGTTCTCGATGCCGTCCGCTCCGTCGCCGACCGTGACTCCACCCTCCGCAAACTCTTCGTCCGCGGCCTCGCCGGCGACACCACCTCCTACACCCTTCGCACCGTCTTCTCTGCCTTTGGCGAACTTGACGAGGCCATCGTAATCTTCGACAAATCCTCCGGCCGCTCCAAGGGCTACGGCTTCGTCGTCTTCCGCCACGTCGACGGCGCCATCCTGGCTTTGAAAGAGCCAAGCAAGAAAATAGACGGTAGAATGACGGTGACGCAGCTGGCGGCGGCGGGAGGCCCGGGCGGCTCCGGCGACGTGTCGACGAGAAAGGTGTTCGTGGGTAACGTGCCGTTCGAGATATCCTCGGAGACGCTTTTGAGCGAATTCATGAAGTTCGGGGAAATCGAGGAAGGGCCTCTAGGGTTTGATAAATCGAGTGGGAAAACGAGAGGCTTCGCTTTCTTCGTTTACAAAACCGAAGAGGGTGCTAGGGCTTCGTTGGTGGAACCATCGAAGACGATTGAGGGACACCAAGTGATTTGCAAATTGGCCGTTGATAACAAAAAGACGAAGGCTTCAGGGTTTGGTGGGGAGCACCAGCAGCATCAGCAACATCAGCAGCAGCAACAAGCTCCTATGTTTGCATCTCAGTACGGTGGGTATGGTGGGGGCGGTGGTTATGCGATGCAGCAGCATTCGGTGCCACCGTTTAGTAATCCTGTTCCGGTTCCGGGTGGTGGTGGGTATGGACATGGGTATGGTAATTCGCAGTTTGGTGGCGCGGTTGCCGGTGACTATGGGGGAAGGGTGGTTCCAAATTCTGGTGGAGGGTTCCCTGATGGGTCGCAATATGGGTTTCCTCCTCCGTCTGCGGTTCCCTCGCAGCCTGCTCCCATGCCAAGACCTCCCCCTGGAGGAATGTGTTTCATTCAGGTTTGTGATGGCTTCTTGGACGCTAATGCTTTAAATGGTTGTGCTGATTTCCTGCATGCAGACAATGAAATCTTTGCTTTTGGTTACATGGACTGCTGTAATTTGTTGCTGCTTCACTACCTCTGCTTCTATGTGTTATGGTTCCATTTGTGGTAG 1266 0.5585 MDLTKKRKTEENGDANSTPPPSSDAAVATTTPLDAEDIRKILQPFSQDQLLDLLQSASLRHPDVLDAVRSVADRDSTLRKLFVRGLAGDTTSYTLRTVFSAFGELDEAIVIFDKSSGRSKGYGFVVFRHVDGAILALKEPSKKIDGRMTVTQLAAAGGPGGSGDVSTRKVFVGNVPFEISSETLLSEFMKFGEIEEGPLGFDKSSGKTRGFAFFVYKTEEGARASLVEPSKTIEGHQVICKLAVDNKKTKASGFGGEHQQHQQHQQQQQAPMFASQYGGYGGGGGYAMQQHSVPPFSNPVPVPGGGGYGHGYGNSQFGGAVAGDYGGRVVPNSGGGFPDGSQYGFPPPSAVPSQPAPMPRPPPGGMCFIQVCDGFLDANALNGCADFLHADNEIFAFGYMDCCNLLLLHYLCFYVLWFHLW* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1720 421 MobiDBLite consensus disorder prediction 14 29 - -
Apr3g1720 421 PANTHER GEO13361P1-RELATED 1 342 - -
Apr3g1720 421 MobiDBLite consensus disorder prediction 1 30 - -
Apr3g1720 421 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 342 - -
Apr3g1720 421 CDD RRM_RBM24_RBM38_like 79 153 - -
Apr3g1720 421 Gene3D - 162 290 IPR012677 -
Apr3g1720 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 252 IPR000504 GO:0003723
Apr3g1720 421 MobiDBLite consensus disorder prediction 337 357 - -
Apr3g1720 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Apr3g1720 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 237 IPR000504 GO:0003723
Apr3g1720 421 Gene3D - 70 157 IPR012677 -
Apr3g1720 421 SUPERFAMILY RNA-binding domain, RBD 164 256 IPR035979 GO:0003676
Apr3g1720 421 SUPERFAMILY RNA-binding domain, RBD 72 158 IPR035979 GO:0003676
Apr3g1720 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Apr3g1720 421 SMART rrm1_1 80 152 IPR000504 GO:0003723
Apr3g1720 421 SMART rrm1_1 169 241 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1720 Apr-Chr3 32916117 32918462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1720 151 243 C2H2 Transcription Factor Family AT2G19380 33.333 8.21e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1720 K12741 - gmx:100804230 466.077