Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1719 ATGGTTTACTCCTTTTATGATAAAAGCTCTTCTTCTGGCTCTGATGTTTCGGGGTTGTTTCATCCCACTTTTCATAACCTCGGAGCTTCCAATGATGTTTCACGAGGTGGGTTGTCATCACAACATTCTTTGGATTTTGAGAGTGAGAAGGGTGAGATGGTGAAGTGCCCTTCAAGTGAGAAGGTAGGAAAGAATGATGTTTCTGAGGCCAAAGCTTTAGCTGCTTTGAAGAGTCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGCAACACTACGTGGCCTTGTTCCCTCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTTATTAGCCAAGTGAATGAATTGAAGAAAAATGCAGTGGAAGCAAGCAAGGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCCTATGATGAAGGAGGAGACGGATCCATGTCTTACAGTGCAACCATATGCTGTGATTTCAGACCTGAGATACTATCTGATCTAAGACAAACACTTGATGCCCTTCAACTACATCTTGTGAGGGCAGAAATTTCTACTTTGGCAGGTAGAATGAAGAATATATTTGTCTTTACATGTTGCAAAAGGGACAATAGTAATAATATTGAGGCATGCCAAGCTCTAGCAGGTAATGTTCAACAGGCACTATGCTCTGTACTGGATAAAGCTTCTAGCTCACTGGAGTTCTCACTCAGAACATCACATCCAAGCAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGAATCTTGTTCGTGCTGA 816 0.4203 MVYSFYDKSSSSGSDVSGLFHPTFHNLGASNDVSRGGLSSQHSLDFESEKGEMVKCPSSEKVGKNDVSEAKALAALKSHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVISQVNELKKNAVEASKGFLIPMDADEVKVEPYDEGGDGSMSYSATICCDFRPEILSDLRQTLDALQLHLVRAEISTLAGRMKNIFVFTCCKRDNSNNIEACQALAGNVQQALCSVLDKASSSLEFSLRTSHPSKRRRLCFIETSTSSCNHESCSC* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1719 271 PANTHER TRANSCRIPTION FACTOR BHLH30 3 264 IPR045847 GO:0003700|GO:0006355
Apr3g1719 271 CDD ACT_UUR-ACR-like 161 232 - -
Apr3g1719 271 Pfam Helix-loop-helix DNA-binding domain 78 122 IPR011598 GO:0046983
Apr3g1719 271 Gene3D - 70 132 IPR036638 GO:0046983
Apr3g1719 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 125 IPR036638 GO:0046983
Apr3g1719 271 SMART finulus 80 129 IPR011598 GO:0046983
Apr3g1719 271 Coils Coil 171 191 - -
Apr3g1719 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
Apr3g1719 271 PANTHER DNA BINDING PROTEIN-LIKE 3 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1719 Apr-Chr3 32891612 32895092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1719 6 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 35.593 3.05e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g1719 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1719 - - gmx:100804756 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1719 3 32891612 32895092 Apr3g1719 3 32891612 32895092 ECH