Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1702 ATGAACGTGACTATTGATTCCGCTCTCTTCGGTTTTCTGTTCCCATCACTTTGGGAGATCAAAGTCACCGTCGCTGCCTCCGTCTTCGTCATCCTTGCCTATTGGTTCTTCTCCTTCAGAACCGGAGACCTCCACGCCGATCCATCGCTTCCCGACAATCCTGTCGCCGCCGGCGATGTTGCCGACGATAAGGACAAGATGGACCAGCCGAAAGTAGATTCTCAGACCAGCTCTGCGTACCTGATTAAGTTAGAACTATTGGCTGCTAAGAATCTCATTGGTGCAAACTTAAATGGCACATCGGATCCTTATGCTATTATCACTTGTGGCAATGAAAAGCGATTCAGTTCAATGGTTCCCGGTTCAAGAAATCCAATGTGGGGAGAGGAATTCAATTTTTCTGTTGATGAACTCCCTGTCCAGATCAATGTCACAATTTATGACTGGGATATAATTTGGAAAAGCGCTGTTCTTGGTTCTGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCTTCAGGGCAGGTTTGTCTCCATATAAAAACAATAAAACTATCTGCAAATTCTTCCAGGATAAATGGTTATGGTGGAGCCAACCCTCGAAGAAGGATGCCATTGGAAAAACAGGGGCCTACTGTAGTTCATCAAAAGCCAGGGCCTCTTCAAACTATATTTTCTCTTCATCCAGATGAGGTTGTTGATCATAGTTATTCTTGTGCTCTTGAGAGGTCATTCTTGTATCACGGTCGGATGTATGTCTCTGCATGGCACATTTGTTTCCATTCCAACGTGTTCTCAAAGCAAATGAAGGTGGTTATTCCATTTGGAGACATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCCATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGGGTTAGATATAAGTTTGCATCATTTTGGAACAGGAATCATGCATTCAGAAACCTGCAGCGTGCAGGGAAGAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAATCAGAACTGCGTGCACATAGCAGTTCTGTCAGAGGAAGTAAGGTACTGGATAAGGTTCCTGAAGAAAGCAAGCCAAAAACGGGACAACTTCAACATTTTATCAAGGAAGAGGCTTTAGTTGGTATATACAATATGGGTCAGTGGCATACAGCAGATGAATATGATGGTCAAGTCCGGGAGATTACTTTCAGATCCCTTTGTAACAGCCCCATGTGCCCTCCAGACACAGCCATGACAGAGTGGCAACATGTTGTTCAATCACCAGACAAGAAAAACCTGGTGTTTGAGACAGTGCAGCAGGCACATGATGTCCCATTTGGATCCTATTTTGAGGTACACTGTAAATGGAGTTTGGAGACAACTAATGGAAACTCATGTACTCTAGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGCGTCATGCAGTCTAAAATAAAGTCAGGAGCAGTCAATGAGTACAAGAAAGAGGTTGAGGTGATGTTAGATGTTGCTCGTTCATATATAAAATCAAGTGCTTCTAGTGACGAGAATGATAAGGCTTCTTTGCCCCCTGCAGCGGCTGTGGAAAGCTGA 1662 0.4392 MNVTIDSALFGFLFPSLWEIKVTVAASVFVILAYWFFSFRTGDLHADPSLPDNPVAAGDVADDKDKMDQPKVDSQTSSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSANSSRINGYGGANPRRRMPLEKQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAFRNLQRAGKNFHEMLEAEKKENAESELRAHSSSVRGSKVLDKVPEESKPKTGQLQHFIKEEALVGIYNMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHVVQSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETTNGNSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSYIKSSASSDENDKASLPPAAAVES* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1702 553 MobiDBLite consensus disorder prediction 533 553 - -
Apr3g1702 553 PRINTS C2 domain signature 97 109 IPR000008 -
Apr3g1702 553 PRINTS C2 domain signature 121 134 IPR000008 -
Apr3g1702 553 PRINTS C2 domain signature 142 150 IPR000008 -
Apr3g1702 553 MobiDBLite consensus disorder prediction 360 390 - -
Apr3g1702 553 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 406 IPR044655 -
Apr3g1702 553 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 406 544 IPR044655 -
Apr3g1702 553 SMART gram2001c 228 294 IPR004182 -
Apr3g1702 553 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 80 190 IPR035892 -
Apr3g1702 553 ProSiteProfiles VASt domain profile. 361 535 IPR031968 -
Apr3g1702 553 Pfam VAD1 Analog of StAR-related lipid transfer domain 405 514 IPR031968 -
Apr3g1702 553 ProSiteProfiles C2 domain profile. 63 178 IPR000008 -
Apr3g1702 553 SMART C2_3c 81 177 IPR000008 -
Apr3g1702 553 Gene3D C2 domain 62 195 IPR035892 -
Apr3g1702 553 Gene3D - 229 347 IPR011993 -
Apr3g1702 553 Pfam C2 domain 83 177 IPR000008 -
Apr3g1702 553 CDD C2 82 178 - -
Apr3g1702 553 Pfam GRAM domain 231 299 IPR004182 -
Apr3g1702 553 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 406 544 - -
Apr3g1702 553 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1702 Apr-Chr3 32651314 32661509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1702 69 166 C2H2 Transcription Factor Family AT4G21160 24.490 2.66e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1702 - - gmx:100789923 1001.12