Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr3g1699 | ATGGTGGGCGAGTTCATTGTTTGCATTGATGGGATTATAACCTCCACGGCATGTTTAGGATCAGTTGGCGATGGAAGACACTCTGATTGTGATGCCCTTCTTAACGTTGACCTTTCTCACAATAGCAGAGAAGGGTGTTCCTCTTCTTCTTTTTCTTCTTCTTCTTCGCACGTGGATGATGTTTTTGAGTGCAGAATATGCCAGGAAGAAGATCAAGTCAAAGCCTTGGAGGCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACTATATGTGAAATCTGTAATCAGGCGTTTTCACCAAATTATTCTCTTCCACCGGTCAGAAGCAATGACATTATGGAAATTGATATGAGGCAAGAATGGGGGCATGATACTGATCTCCATGTGGCTCTAGCTTCAGCAGAGCACCAGTTGCTGCAAACTGAGTATGAAGATTACGCTGTGACACAAACCAGTAGCATTGCTTGCCTCCGCTCTGTCACTCTAATGTTGCTGATAATTTTGCTTGTACGCCAAGCTTTAGTGGTCACAAAGAACTCCACAACTGGGCACAATGCATCTACAATCTTTAATTTTGAGATGTCACTCCTTCAATTTGCCGGCATTCTTTTGCCATGCTACGCAATGGCACGGTCCTGGTATGTCATACAGAACCGAAGAAGAAGACAGGGTTAA | 720 | 0.4375 | MVGEFIVCIDGIITSTACLGSVGDGRHSDCDALLNVDLSHNSREGCSSSSFSSSSSHVDDVFECRICQEEDQVKALEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQAFSPNYSLPPVRSNDIMEIDMRQEWGHDTDLHVALASAEHQLLQTEYEDYAVTQTSSIACLRSVTLMLLIILLVRQALVVTKNSTTGHNASTIFNFEMSLLQFAGILLPCYAMARSWYVIQNRRRRQG* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr3g1699 | 239 | Pfam | Protein of unknown function (DUF3675) | 115 | 228 | IPR022143 | - | |
| Apr3g1699 | 239 | CDD | RING_CH-C4HC3_MARCH | 64 | 110 | - | - | |
| Apr3g1699 | 239 | SUPERFAMILY | RING/U-box | 62 | 113 | - | - | |
| Apr3g1699 | 239 | Pfam | RING-variant domain | 64 | 109 | IPR011016 | GO:0008270 | |
| Apr3g1699 | 239 | SMART | ringv_2 | 63 | 110 | IPR011016 | GO:0008270 | |
| Apr3g1699 | 239 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 238 | IPR033275 | - | |
| Apr3g1699 | 239 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 56 | 116 | IPR011016 | GO:0008270 | |
| Apr3g1699 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 115 | IPR013083 | - | |
| Apr3g1699 | 239 | PANTHER | OS01G0894600 PROTEIN | 1 | 238 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr3g1699 | Apr-Chr3 | 32623889 | 32628101 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr3g1699 | 63 | 109 | C3H Transcription Factor Family | AT2G37950 | 44.000 | 8.06e-07 | 46.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr3g1699 | - | - | gmx:100812120 | 363.614 |