Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1686 ATGGGTTCGGTTCCTTCAGAACTGACCTTGGATTTACGACCGACTTTCGTTCCCAAAACCATCACTGATTTCCTCTGCCACCTCTCCTCTGCCCCCGATAAGCTTCCCAGGCTCCACGATTTCCTCGCCCGTTTGGAGGACGAACTCAGAAAGATCCACGCCTTTAAACGCGAGCTCCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCAGTTGTCAGGGAGGAATCGGAGAAATGCAGGGCTCGTAATTCGGTACCAGTGCTGGAAGAGTTTATTCCCCTGAAGAAAGAGCGCGATGAGAACGAGGATAACGATAACAAAGACACGGAATGCAGGGATAAGAAGAATTGGATGAGTTCGGTTCAGCTCTGGAACAACACTGCCACTTGTAATAATGACGCCTCTGATCACAAACAACATCGTAAATTAGAAATCAAGAAGAGTGAAGAAGAAGGGCAATCTGTGGGTGAGGACCCATTTCAATCTTGTAGTTATAGAAACGGAGGAGGGAGAGGTTTTATGCCTTTCTCTGCATACACTTGTTCCTCTTCTTCTTCTGTCCCTGTGAGAACAGTGGCACTGGGAAACAAAGAAGAGAAGGAAGATAGTGTTGTGAATAGACTTTCTCTTTTAAGCCCTCCAGTGAAGAGCTTCAAAGAAGGGTGTGGTTCCAGGGGATCAAGAAGCAGCAGTTCCAATAGGGCTGTTTCTTCATCTCCTCCTACGGTTCAACCTAGTTTGCGTGCAGCACCGCTTCAGCACCAACAGACAGCGAGGAAACAGAGGAGGTGCTGGTCCCCTGAGTTGCATCGTAGATTTGTTAATGCTTTGCAGAAACTCGGTGGCTCTCAAGCAACACCAAAGCAAATTAGAGAGCTCATGCAGGTTGATGGGCTGACTAATGATGAAGTGAAGAGCCATTTACAAAAATATCGACTTCATACGCGGAGAGTTCCAACTGCAAGTGGGAATCAGCCAGTTGTAGTTCTTGGAAGCTTGTGGATGTCTCAAGATCAGTACAATGACTCTTCAAAGGTTAGCAGTTCAGGGTCTGGTTCTCCTCAAAGTCCCCTTCATTTAGGTGCAGGGTGCAGGGGAGGGACATCCCCAACTGAGGGTGACAGCATGGAAGATGATGAAGATGCAAAATCCGAGAGTTATAGCTGGAAAAGTCAGTTGCACAAAGCTGCAAAAGTTGATGTATAG 1209 0.4715 MGSVPSELTLDLRPTFVPKTITDFLCHLSSAPDKLPRLHDFLARLEDELRKIHAFKRELPLSMLLLNDAISVVREESEKCRARNSVPVLEEFIPLKKERDENEDNDNKDTECRDKKNWMSSVQLWNNTATCNNDASDHKQHRKLEIKKSEEEGQSVGEDPFQSCSYRNGGGRGFMPFSAYTCSSSSSVPVRTVALGNKEEKEDSVVNRLSLLSPPVKSFKEGCGSRGSRSSSSNRAVSSSPPTVQPSLRAAPLQHQQTARKQRRCWSPELHRRFVNALQKLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPTASGNQPVVVLGSLWMSQDQYNDSSKVSSSGSGSPQSPLHLGAGCRGGTSPTEGDSMEDDEDAKSESYSWKSQLHKAAKVDV* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1686 402 MobiDBLite consensus disorder prediction 217 264 - -
Apr3g1686 402 SUPERFAMILY Homeodomain-like 258 318 IPR009057 -
Apr3g1686 402 MobiDBLite consensus disorder prediction 341 357 - -
Apr3g1686 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 261 315 IPR006447 GO:0003677
Apr3g1686 402 MobiDBLite consensus disorder prediction 148 167 - -
Apr3g1686 402 MobiDBLite consensus disorder prediction 224 261 - -
Apr3g1686 402 MobiDBLite consensus disorder prediction 341 402 - -
Apr3g1686 402 PANTHER TRANSCRIPTION FACTOR HHO6 7 395 - -
Apr3g1686 402 Pfam Myb-like DNA-binding domain 263 313 IPR001005 -
Apr3g1686 402 Gene3D - 258 319 - -
Apr3g1686 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 317 IPR017930 -
Apr3g1686 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 395 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1686 Apr-Chr3 32470635 32473211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1686 6 336 G2-like Transcription Factor Family AT2G03500 40.974 7.03e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr3g1686 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1686 - - gmx:100806237 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1686 3 32470635 32473211 Apr3g1686 3 32470635 32473211 ECH