Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1680 ATGGGGGTTTGCACTTCGAAGCCGCAGAAGCCGAACCCTTACGCGCTTCGAGAAACCGAAGCCGACCCAACACAGGTCCCGAAAACCCCACTAAATGACGTCATCGCCGGGAAACAGTCGCCTTTCTTCCCGTTCTATAGCCCCAGCCCCGCTCACTTCCTGAAGAAGTCTCCGGCGCCGGCGGGAGGGAGCAGGAGCGCTAGCTCGACGCCAAGAAGGTTTTTCCGGCGACCCTTTCCGCCGCCGTCGCCGGCGAAGCACATAAGGGCGGTGCTGGCGAGGAGGCAGGGAAAGAAGGCTGCGGCAGCGATACCGGAGGAGGCGGAGGAGGAGGGTGGTGGTGATGCGGCGGATTTGGATAAGAGGTTTGGGTTCTCGAAAGAGTTCAGTAGTAGGTTAGAGGTTGGGGAAGAAGTGGGTCGAGGACATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAACTTAAGGGTCAACAAGTGGCTGTTAAGGTTATCCCAAAAGCAAAGATGACAACAGCAATTGCGATTGAAGATGTGAGAAGGGAGGTAAAAATTTTGCGGGCTTTGAATGGACACAGCAATCTGGTACAGTTCTATGAAGCATTTGAAGATCAAGATAATGTCTACATTGTGATGGAGTTATGTGAAGGTGGGGAGCTCTTAGATATGATACTATCAAGAGGAGGGAAATACTCTGAAGATGATGCAAAGGCTGTCATGGTACAGATACTAAATGTCGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCAGAGAACTTTTTGTATACTACAAAGGATGAAAGTTCTGAGTTGAAAGCTATTGATTTTGGATTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCTGAAGTACTCCATAGATCTTACAGCACAGAGGCTGACGTATGGAGTATAGGAGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCGCGAACAGAGTCTGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCCAGCTTTGATGAAGCTCCATGGCCATCTTTATCTTCAGAAGCGAGAGATTTTGTCAAACGCTTGTTGAACAAGGACCCACGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCATGGATACGGAATTACAATAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGGTTTATATGAGATCATCATCCTTGCGCAAGGCTGCCTTAAGGGCCTTGTCAAAGACATTGACAGCTGATGAACTGTTTTATCTGAGGGAGCAATTTGCACTGCTAGAACCAAGCAAAAATGGCAGCATATCTCTAGAGAATGTTACCAAGGCCTTGATGAAACATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTTCCTCGCTTAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCAGCTGCATTAAGTGTACATCAGCTTGAAGCCCTTGATCGATGGGAGCAACATGCCCGATGTGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCGGAACTTGGACTTGGACCTTCAATCCCTGTTCACGTTGTTCTTCATGATTGGATACGCCACACTGATGGGAAGTTAAGCTTTCTTGGATTTGTCAAATTATTACATGGTGTATCTAGCCGAAGCCTCGCAAAGGTTCAATAA 1764 0.458 MGVCTSKPQKPNPYALRETEADPTQVPKTPLNDVIAGKQSPFFPFYSPSPAHFLKKSPAPAGGSRSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAAAAIPEEAEEEGGGDAADLDKRFGFSKEFSSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYEAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTTKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSSEARDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKVYMRSSSLRKAALRALSKTLTADELFYLREQFALLEPSKNGSISLENVTKALMKHATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1680 587 Gene3D - 413 574 - -
Apr3g1680 587 PANTHER CDPK-RELATED KINASE 2 28 581 - -
Apr3g1680 587 CDD STKc_CAMK 134 394 - -
Apr3g1680 587 ProSiteProfiles Protein kinase domain profile. 133 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1680 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Apr3g1680 587 Pfam Protein kinase domain 134 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g1680 587 ProSitePatterns Protein kinases ATP-binding region signature. 139 165 IPR017441 GO:0005524
Apr3g1680 587 MobiDBLite consensus disorder prediction 1 35 - -
Apr3g1680 587 MobiDBLite consensus disorder prediction 54 117 - -
Apr3g1680 587 SUPERFAMILY Protein kinase-like (PK-like) 131 432 IPR011009 -
Apr3g1680 587 Gene3D - 435 504 - -
Apr3g1680 587 SUPERFAMILY EF-hand 423 577 IPR011992 -
Apr3g1680 587 Gene3D Transferase(Phosphotransferase) domain 1 223 412 - -
Apr3g1680 587 Gene3D Phosphorylase Kinase; domain 1 135 222 - -
Apr3g1680 587 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 581 - -
Apr3g1680 587 SMART serkin_6 133 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1680 Apr-Chr3 32378100 32383720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1680 1 583 EF-hand Containing Proteins AT3G50530 73.113 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr3g1680 Pkinase 8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1680 - K00924 gmx:100798913 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1680 3 32378100 32383720 Apr3g1680 3 32378100 32383720 ECH