Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1677 ATGGCTCAACCAACCACCAACGGCGATCTGAATCAGCAGGCTCAGCAGCCGCAGCAGCAGTGGGCGCAGCCGCATCAGTATCAGCAACAATGGATGGCCATGCAGTACCCTGCCACCGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAGCATTACATGCCTTATGTTCACCACCATTACCAGCCGCAACAGCCGCCGCCTCCGCCGCACCACCACCACCACCACCATAAACAAGCCTCCTCCGATGAGATCAGGACCATCTGGCTCGGCGACCTTCACCATTGGATGGACGAGAACTACCTCCATAACTGCTTTGCTCACACAGGCGAGGTTGTGTCAGCCAAGGTCATACGAAATAAGCAAACGGGTCAGTCGGAGGGATATGGATTTGTGGAATTCTATTCGCGACCAACGGCTGAGAAAATTTTGCAAAACTATAACGGTACGATGATGCCAAATACGGACCAGGCATTTCGTCTGAATTGGGCTACATTCAGTGCGGGTGAAAGGCGTCCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTAGCAGATATTCATCTATCAAAGGAGCTAAAGTTGTCATTGATTCGAATACTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAGAGAACAAGAGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGACCCATGAGAATAGGTGTTGCGACGCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCACAAGCTGTAGTGTTGGCTGGTGGACACTCATCTAATGGTGCTGTGGTCCAAGGTTCCCAGTCTGAAGGAGATTTAAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATTAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTTGTCTCTGTGAAAATTCCAGTTGGTAAAGGTTGTGGTTTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCACTGAATGGAACAATAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGCCGCAGTCCAGGAAATAAGCATTGGAGGACTGATTCCAATGGAAGCCACTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGCGAGACAGAATCAGGATATAGCCATGCAACCAGCTGCTGCAATTCAAGGGGCTTCCTGA 1254 0.4745 MAQPTTNGDLNQQAQQPQQQWAQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPQQPPPPPHHHHHHHKQASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRPTAEKILQNYNGTMMPNTDQAFRLNWATFSAGERRPDATSDLSIFVGDLAIDVTDAMLQETFASRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSSNGAVVQGSQSEGDLNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTIIGKQTVRLSWGRSPGNKHWRTDSNGSHYGGQGYGGHGFAARQNQDIAMQPAAAIQGAS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1677 417 MobiDBLite consensus disorder prediction 61 85 - -
Apr3g1677 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 416 - -
Apr3g1677 417 Gene3D - 281 404 IPR012677 -
Apr3g1677 417 CDD RRM2_SECp43_like 180 259 - -
Apr3g1677 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 372 IPR000504 GO:0003723
Apr3g1677 417 Gene3D - 87 167 IPR012677 -
Apr3g1677 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Apr3g1677 417 CDD RRM1_SECp43_like 89 169 - -
Apr3g1677 417 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 18 416 - -
Apr3g1677 417 CDD RRM3_NGR1_NAM8_like 299 370 - -
Apr3g1677 417 SMART rrm1_1 182 256 IPR000504 GO:0003723
Apr3g1677 417 SMART rrm1_1 301 368 IPR000504 GO:0003723
Apr3g1677 417 SMART rrm1_1 89 164 IPR000504 GO:0003723
Apr3g1677 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 157 IPR000504 GO:0003723
Apr3g1677 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Apr3g1677 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 365 IPR000504 GO:0003723
Apr3g1677 417 Gene3D - 168 274 IPR012677 -
Apr3g1677 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Apr3g1677 417 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g1677 417 SUPERFAMILY RNA-binding domain, RBD 181 373 IPR035979 GO:0003676
Apr3g1677 417 SUPERFAMILY RNA-binding domain, RBD 50 169 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1677 Apr-Chr3 32340361 32344774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1677 90 379 Eukaryotic Initiation Factors Gene Family AT4G34110 29.492 2.21e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1677 - - gmx:100798089 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1677 3 32340361 32344774 Apr3g1677 3 32340361 32344774 ECH