Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1659 ATGTCTTCCTCCTCCTCCTCCTTCTCCCCCGCCTCTCTCTCCACCGAGCAAGAGCTCTCCGTCATCGTCGCCGCCCTCACCAACGTCGTCGCCGGCTCCACCTCCTCCACTTCCGTCTCCGAATTCCGCCTCCCCCTTACTTCCGACACCTCCGCCGGCACCAGCTTCGACCGGATTGTGCCCAACATGGACACTTGTCGCGAGTGCAACATCGCCGGCTGCTTGGGATGCAACTTTTTCCCCGAAGAGAAGAAGAAGCAGAAGAGACCCAAAAAGAAGTACAGAGGCGTGAGGCAGAGGCCTTGGGGCAAATGGGCTGCCGAAATCCGAGACCCCAGACGCGCGGCCCGGGTCTGGCTCGGGACATTCAATACTGCAGAGGAAGCCGCCCGGGCTTACGACAAGGCCGCTATCGAGTTCCGCGGCCCGCGGGCTAAGCTCAACTTTCCGCTGGTGGACGAGTCCCTGAGCTTGCAACAGAGCGAGGCAGAGAGGGTTGCCATTGCCGCCGAAGAGGAAATAAAGGAAGAGAATCTGAATCAGGGAATGGAAATGGATGCACTCGCGTTTGGAAACAAGGATACCGAATTCTGGGATTGGATTGGCGAAGACGATTTTCAACAGCTCAAGAGGATGATGGATTTTGCTGGAGACTCTTCCGATTCTGCTACTGGGAACACTCTTAGTTCCTAA 693 0.5714 MSSSSSSFSPASLSTEQELSVIVAALTNVVAGSTSSTSVSEFRLPLTSDTSAGTSFDRIVPNMDTCRECNIAGCLGCNFFPEEKKKQKRPKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDKAAIEFRGPRAKLNFPLVDESLSLQQSEAERVAIAAEEEIKEENLNQGMEMDALAFGNKDTEFWDWIGEDDFQQLKRMMDFAGDSSDSATGNTLSS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1659 230 ProSiteProfiles AP2/ERF domain profile. 93 150 IPR001471 GO:0003700|GO:0006355
Apr3g1659 230 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 7 226 - -
Apr3g1659 230 Coils Coil 160 180 - -
Apr3g1659 230 SMART rav1_2 93 156 IPR001471 GO:0003700|GO:0006355
Apr3g1659 230 SUPERFAMILY DNA-binding domain 93 151 IPR016177 GO:0003677
Apr3g1659 230 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 226 - -
Apr3g1659 230 CDD AP2 94 150 IPR001471 GO:0003700|GO:0006355
Apr3g1659 230 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Apr3g1659 230 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Apr3g1659 230 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Apr3g1659 230 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1659 Apr-Chr3 32157476 32159268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1659 13 158 AP2-EREBP Transcription Factor Family AT4G34410 45.652 1.34e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr3g1659 AP2 5.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1659 - - gmx:100820426 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1659 3 32157476 32159268 Apr3g1659 3 32157476 32159268 ECH