Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1646 ATGGCTACCCCAAGTAAATCAACACCAATGATATCTTTAGACTCTTTGGAACAGAAGGGGAACACTGTGACTGAATCAAATGCAAACATTGTTCAATGTCCGTTAAACCAACAAATCCATAACTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCTGAAGATGTGGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAAGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCCAATGGTAGAAAAGATGCTGCTGACAAAGCTATTTTGGTTGACATGTTCTTATTTGCACTTGACAACCCTCCTCCATCCTCTATCATGCTTATATCTGGAGATGTTGATTTTGCTCCAGCTCTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGAGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGTGTGGCTCGTGGAGAAGGCTTTGTGCCCCCCTCAAAGGCTTTAGTGCCACCCCGTGGAGCTCCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACAACTCTGATGGACAAAATGATGAAGAAGCAATAGTTTATAGAGGGATGTCGCAGAGCTATTATAACTCAAGGGAATTCTCAGTGGTGCCGCAATCTCTGTCTGAATACAACTGTGGCACATCAAACCTTCCTTGCGTGCCAACAACTTTGAGATCACATAGCCTTCCGTCTATATTGAATGATGTTTCAGGAGGACCCATTGCTTCAAGTGACCATAATGAATGTCAGTTATGGGTACAACCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTTGAACTTTCTGGAGGATGCCTGCCTCTGCCCCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATGCCATGGCTGTGGAAGGGAAAGGGCATCGCAAATTTGTGTATCTAAGAAACTGGAAGGCTAGCCCAAGTGCTCCTCCTCTGTCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGAGCCCAGGAAGAGAATGTGAATGTTGTCACTGGTGGCTGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATAGAAGAACACGATGAAAGTTGTGCACAAAAGGGCAATCATGGGAGAGCAGCCAAATGTGAAATTGATGACCATTTTCTCGAGGAGTTCAAGTATGAGCTGCAAGAGATTCTTGTAAGCTATTCATGTAGAATATTCTTAGGTTGTTTTGAGGCTATATACCAGCAGCGGTACAAGAAACAACTGGAATATAAGAGATTTGGTGTGGACAAGTTGGAAGATTTGTTTGAGAAGGTGAGGGATGTGGTAGTGTTGCATGAGGAACCAGTAAGCAAGAGAAAATTCCTGGCTGCTGTGGGTAGTTAA 1593 0.4388 MATPSKSTPMISLDSLEQKGNTVTESNANIVQCPLNQQIHNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGAPIELAGYLMGCHINDNSDGQNDEEAIVYRGMSQSYYNSREFSVVPQSLSEYNCGTSNLPCVPTTLRSHSLPSILNDVSGGPIASSDHNECQLWVQPGDLNGLKGQLVRLLELSGGCLPLPRVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGDAMAVEGKGHRKFVYLRNWKASPSAPPLSLAKKDKKGKGAQEENVNVVTGGCSSDEFSDEERVVIEEHDESCAQKGNHGRAAKCEIDDHFLEEFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYKRFGVDKLEDLFEKVRDVVVLHEEPVSKRKFLAAVGS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1646 530 Pfam NYN domain 46 186 IPR021139 GO:0004540
Apr3g1646 530 CDD LOTUS 312 381 - -
Apr3g1646 530 Gene3D - 311 380 IPR041966 -
Apr3g1646 530 Gene3D - 452 522 IPR041966 -
Apr3g1646 530 CDD LOTUS 456 518 - -
Apr3g1646 530 MobiDBLite consensus disorder prediction 389 408 - -
Apr3g1646 530 Pfam OST-HTH/LOTUS domain 456 518 IPR025605 -
Apr3g1646 530 Pfam OST-HTH/LOTUS domain 313 379 IPR025605 -
Apr3g1646 530 PANTHER - 33 525 - -
Apr3g1646 530 Gene3D - 41 192 - -
Apr3g1646 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Apr3g1646 530 CDD PIN_limkain_b1_N_like 46 172 - -
Apr3g1646 530 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Apr3g1646 530 PANTHER LIMKAIN B LKAP 33 525 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1646 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 4.28e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1646 - - gmx:100818186 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1646 3 31981311 31984401 Apr3g1646 3 31981311 31984401 ECH